| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0726 |
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| Symbol | |
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| ID | 5052926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 724392 |
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| End bp | 725804 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640470883 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_001155508 |
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| Protein GI | 145588911 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.999189 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAAGCT TCAAACAAAA TACGCACGAG ACCTTTTTGG GGCTTTCTGA GTCAGTTAAG
GAAAAATGGG CTGACTTCAC TCAATTTTTG AAAGAAGCAT GGCCTCTTTT GCTTTTGCTG
CTGCTGATTT TAATGGGCAT CTGGTGGTAT GCGGATCCAC CCCCTCCGAG AAGAATTTCT
ATAGCGACTG GATCTGCTGG TGGGGCTTAT GAGGTTTTAG GAAAACAATA TGCTGAATTT
TTTGCAAAAA AAGGCGTTAC TCTTGAGCTC GTTTCTACTA ATGGCGCACA AGAAAATATC
AATCGCCTAG TCGATAAAAA GGATCCAGTA CAAGCTGCAT TTGTGCAAGC AGGAGTTACA
CGCCCAAAAG ATATTAGCCG AGGTATTCAA ACATTGGGCG CGATTGCTTA TGACCCAATT
TGGTTTTTCT ATCGCGGCCA AGAGATCAAT AGCGCTGACT TTGAGGAGTT ACACCAAAAG
CTGAAGTATT TCAAAGATAA AAAAATCAAT ATTGGTATTG ATGGTAGCGG AACCAATGCT
CAAGCGACCC GTATTCTTCG TGTTACGGGA CTAGAAGATG AACGTGATTT CTTACGTATG
CGCGGAGATC AGGCTGTAAA AGCCTTGCAA AGCGGAGAGA TTGACGGCAC CTTTATTGCT
GATGGCTATG ATTCGCCAAA TGTTCAGATG CTTCTACACG ATCCCAAAAT CCATTTAGTA
GCCTTTAAAC GTGCTTCAGC TTTTGTGAAG ATTATTCCCT ATCTGCATAT CATGGATGTG
CCTGAAGGAT CTTTTGATCT ACCTCGCAAT TTTCCCCGTG AAGATATGAA GTTGCTGGCT
ACTACAACAA ATTTATTAAT CGATGATCGG ATGCATCCAG CAATTCAATT CCTTTTTCTG
GAAGCAGCTA GGCAGATTAA TGGCAAAGCC TCTTTTTTCG CAAGAAGAGG GGAGTTTCCA
TCTTTTAAAG ATTCTCTATT GCCCGAGAGT CCAGTGGCAG TTCATTATGA AAAAAATCAT
TACCCTCTGC TGGCTGCTTA TTTTCCATTT TGGCTTGCTG AGCTCATTAA TAGACTCGTT
ATTATTTTCT TGCCGTTCTG TGCACTCGCT TATCCCATCT TACGAGCATT GCCTGGTTAT
CGTACTAAAC GTATGTATGG AAAGATCAAT CGTCTTTATG GCAACTTAAA AGAATTTGAG
CAAGATTTAT TGGTGAGCTA TAGCCCTGCA CAGCGTGATG AATATCTCAA GCGTTTAGAT
TTAATCGAGT ATCAGGCCTT AAAGATTCAG GTTTCTAAAT CAATTGCAGC TGATTACTAT
TCCTTGAGGA CTAGTATTGA TTTCGTGCGC AACTGCCTCA ATAGGGGGGT ACAGTCCTAT
CAATATGAAG GGGCTGTAGA TCTCGATTTA TAG
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| Protein sequence | MGSFKQNTHE TFLGLSESVK EKWADFTQFL KEAWPLLLLL LLILMGIWWY ADPPPPRRIS
IATGSAGGAY EVLGKQYAEF FAKKGVTLEL VSTNGAQENI NRLVDKKDPV QAAFVQAGVT
RPKDISRGIQ TLGAIAYDPI WFFYRGQEIN SADFEELHQK LKYFKDKKIN IGIDGSGTNA
QATRILRVTG LEDERDFLRM RGDQAVKALQ SGEIDGTFIA DGYDSPNVQM LLHDPKIHLV
AFKRASAFVK IIPYLHIMDV PEGSFDLPRN FPREDMKLLA TTTNLLIDDR MHPAIQFLFL
EAARQINGKA SFFARRGEFP SFKDSLLPES PVAVHYEKNH YPLLAAYFPF WLAELINRLV
IIFLPFCALA YPILRALPGY RTKRMYGKIN RLYGNLKEFE QDLLVSYSPA QRDEYLKRLD
LIEYQALKIQ VSKSIAADYY SLRTSIDFVR NCLNRGVQSY QYEGAVDLDL
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