| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0711 |
|---|
| Symbol | |
|---|
| ID | 5052860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 709318 |
|---|
| End bp | 711147 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640470868 |
|---|
| Product | AsmA family protein |
|---|
| Protein accession | YP_001155493 |
|---|
| Protein GI | 145588896 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAC TAGTCAAAAT CATCCTGCTA GGGTTAGCCA TCTTCTTAAG CGTAGTTGGT
GCTGGAGCGT GGTATGCCTC ATCTCTGATC AACCCCGCGC ACTTATCGCA ACTCATCATT
TCTTCAGTGA AAGATGCCAC TGGACGAAAT TTGACTATTT CAGGACCGGT AAGCTTAAAA
GTGTTCCCAT CGGTTGCTGT TACTGCCGAC CAAGTTTCAC TAAGCAATGC CACTTGGGCT
AGCAATACCG ATCCCAATAT GTTGGTTGTG AAACATCTTG AATTTGAAAT TAAGTTGCTA
CCTCTATTTA AAAAGCAAGT AGAAATTAGC ACTATTAATA TTGCGGGCTT AAATCTATAT
CTGCAGACGA ATAAGGCGGG ACAAGAAAAC TGGGATTTAA CCTTGCCTGC TGCACCATTT
ACAGCCGCTG CAAACTCTGC AATCAATCCA TCTGCATCTA GTTCAGAGCA GTCTCTCCCA
GACCAAATTT CAAGCATCCA CGTCACTGAT GCAAGAGTGA CTTACAAAGC TTGGGGTGCG
CCCACTAAAT CCATTTCTAT TCCCAAGCTG ATATATGAAG GGCGAGAGGG TAAGTCTGAG
TTTGATGCTC AGGCGGATTA CTCGGGGTAT CAGTTTGCCC TTAAGGGAAA AACAGGTAAC
CTTCGCTCGA TGTTCAATGC ATGGGATGAC AAGCCGGTTA AGGCAGATTT AGACTTCACG
TTAACTTTGA ATGGCAAAAC GATGCTGATT CAAGGTTCTG TAGATAAGAA GCCCAAAGCT
TTAGCTAAAT TTGATGTTCA ATTAAGCTCA AAATCTTTTG ATTTCATCCC ACTCATTGCA
GGCGCTTCAG CGGCTCAGAT GGGAAGCGCT AAAGGCGTCT CATCTGTCGC CTCTTCAACT
AGGTCTGAGG GCAAAGGAGG ATATTTCTTT AGTGAGGAGG ATTTGCCTTT TCACTTACTG
CCAGTGGCCA GTGGCAAGGT CGCTTTTAAT ATTGGCCAGT TGAAAATTTC TGGTTTTGCG
CCATTGGACA ATTTCAAAGG GGATTTGATA TTTAATGGCG ATCAATTGAG TGCTAATGAT
TTTAGTTTTG AGATAGGTAA GGGTAGCGCT CAGATTCAGC TAGCAGTGTC ACAGTTTTCT
GGGCCTTCTC CATCGGTTGC CGCTAAAGGT CTTATGAAAG GCTTTACGCT TGAACAAATC
AGCTCTGCTG TGCGCCCTGG AACCAAAGTG GCGGGAGGTG ATACTCAAAT CGCATTTAAT
CTGCGTGGTA GTGGTTTAAG CGCCCATCAG CTGGCCAGCC GAGCAAATGG CGCCGTTCAA
ATTTCAGTAG GAAGCAGTCA ATTAGATTCC AAGTTTTTGG ATAGCACCGG AGATCTGGTT
ATTACCGTTC TCAATGCAGT AAACCCCATG CGTAAAAGTA CTGATCAAAC AACCTTGGAA
TGTGCGGTGG CTTATTTGCC AGTAAGTAAT GGTTTGGTGA CGATGAATAA CTCTATCGGA
ATGGTGACGG ATCGTTTAGA TATTGTGTTA TCTGGTACGG TTAATTTGAG TAATGAGGCG
TTAAATGTGC TTATCAATCC AACGGAAAAA TCAGGTCTTA CTACCGGGGT AGACCTGGCA
GGCCTAGTGA AGCTGGGGGG TACTTTAATG AATCCTCAGG CTGGCGTGAA TAAGGCTGGG
GTAGTCAATA GCGCAGTATC GATTGGGCTA GGTATTTTGA CGGGGGGCGC TACTATTTTG
GCTGAGAACG CTCGATCTCT TACTAACAGG CCGCAGCCTT GTAAGGCCGC GTTACATTCT
TGGCCTGATA TTTATCCGGG CTCCAACTAA
|
|---|
| Protein sequence | MNKLVKIILL GLAIFLSVVG AGAWYASSLI NPAHLSQLII SSVKDATGRN LTISGPVSLK
VFPSVAVTAD QVSLSNATWA SNTDPNMLVV KHLEFEIKLL PLFKKQVEIS TINIAGLNLY
LQTNKAGQEN WDLTLPAAPF TAAANSAINP SASSSEQSLP DQISSIHVTD ARVTYKAWGA
PTKSISIPKL IYEGREGKSE FDAQADYSGY QFALKGKTGN LRSMFNAWDD KPVKADLDFT
LTLNGKTMLI QGSVDKKPKA LAKFDVQLSS KSFDFIPLIA GASAAQMGSA KGVSSVASST
RSEGKGGYFF SEEDLPFHLL PVASGKVAFN IGQLKISGFA PLDNFKGDLI FNGDQLSAND
FSFEIGKGSA QIQLAVSQFS GPSPSVAAKG LMKGFTLEQI SSAVRPGTKV AGGDTQIAFN
LRGSGLSAHQ LASRANGAVQ ISVGSSQLDS KFLDSTGDLV ITVLNAVNPM RKSTDQTTLE
CAVAYLPVSN GLVTMNNSIG MVTDRLDIVL SGTVNLSNEA LNVLINPTEK SGLTTGVDLA
GLVKLGGTLM NPQAGVNKAG VVNSAVSIGL GILTGGATIL AENARSLTNR PQPCKAALHS
WPDIYPGSN
|
|---|
| |