| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0680 |
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| Symbol | |
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| ID | 5052354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 677955 |
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| End bp | 679649 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640470835 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_001155462 |
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| Protein GI | 145588865 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.106773 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGCC TCAATGAACG CTCTCGCATG GTTACCGAGG GGGTCGCTCG CGCACCCAAT
CGTTCGATGT ACTACGCGAT GGGTTACGAA GAAAAGGATT TCGTAAAACC AATGGTTGGC
GTTGCAAACG GCCACTCCAC TATTACCCCT TGCAATAGTG GCTTACAAAA ATTAGCTGAT
GCCGCAGTTG AAGCTCTAGA AGCAGCTGGC GCAAAAGCAC AAGTATTTGG TACGCCAACC
GTTTCTGATG GTATTGGTAT GGGTACTGAG GGTATGAAGT ATTCCCTCGT CTCACGAGAA
GTGATTGCTG ACAGTATTGA AGTTTGTGTA AACGGTCTTT GGCAAGATGG CGTAGTAGTC
ATTGGTGGCT GCGATAAAAA TATGCCTGGT GGCATGATGG CTTTAGCTCG CACGAATGTA
CCTGGCATCT ATGTATATGG TGGCACGATT AAGCCAGGCC ACTTTAAAGG CAAGGAATTG
AATATTGTTT CTGCATTTGA AGCAGTTGGT GAATTTACCT CCGGTCGATT GAGTGAAGAA
GATTTAAAAG GTGTTGAGCA ACACGCCTGC CCAGGTAGCG GCTCTTGCGG TGGAATGTAC
ACGGCCAATA CCATGAGCTC TTCATTTGAG GCTTTGGGTA TGAGCTTGCC CTACTCTTCT
ACGATGGCAA ACGTTGACGC TGAAAAAGTA GCGAGCGCTG CCGAATCAGC GCGCGTCCTC
GTTGAAGCCG TTAAAAACAA CCTGCGCCCA CGCGACATCA TTACCAAGAA ATCCGTTGAG
AATGCGGTTA GCGTCATCAT GGCAGTTGGC GGTTCAACCA ATGCAGTGTT GCATTTCTTG
GCGATTACTA GTGCCGCTGA AATTGATTGG ACAATTGATG ACTTTGAACG GATTCGTAAG
CAAGTCCCAG TCATCGTTGA TATGAAACCC TCTGGCACTT ATTTAGCAAC TGACTTACAC
CAAGCTGGCG GTATTCCACA AGTCATGAAG ATTTTGCTTG ACGGTGGCCT GCTTCATGGC
GATTGCATCA CCATTACCGG AAAAACTATT GCTGAAGTAT TAAAAGATGT TCCATCAGTG
CCGCGCGCTG ATCAAAAAGT CATTCGCACG CTAGACAACC CACTCTACAA GCAAGGTCAC
TTAGCGATTC TGAAGGGCAA TATTTCTCCA GAAGGGTGCG TTGCCAAAAT TACTGGCCTC
AAGAATCCAT CGATTACTGG CCCAGCTCGA GTCTTTGATT CTGAAGATGA TGCGATGGCT
GCCATCATGG CTCAGAAGAT CAAAGATGGC GACATCGTGG TGATTCGTTA CGAAGGCCCT
AAAGGCGGTC CTGGTATGCG TGAAATGCTT GCCCCTACCT CTGCCCTAGT TGGTCAAGGT
TTAGGCGAGT CAGTTGGCCT CATCACCGAT GGTCGCTTCT CTGGTGGTAC TTGGGGCATG
GTAGTTGGTC ACGTTGCTCC TGAGGCCTTT GTAGGGGGCA CAATTGCCCT CATCAACGAA
GGTGACTCAG TCACGATAGA TGCTCACCAA CTTCTTATTC AGCTCAACGT CAGCGAAGAA
GAAATTGCTA AGCGACGCGC AGCTTGGAAA CAACCTAAGC CACGCTATAC CCGCGGCTTA
CTTGCGAAGT ATGCAAGCCT TGCTAGTAGT GCGAGCAAAG GTGCTGTAAC CGATTTGAAT
TTAGATTTGA CCTAA
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| Protein sequence | MKRLNERSRM VTEGVARAPN RSMYYAMGYE EKDFVKPMVG VANGHSTITP CNSGLQKLAD
AAVEALEAAG AKAQVFGTPT VSDGIGMGTE GMKYSLVSRE VIADSIEVCV NGLWQDGVVV
IGGCDKNMPG GMMALARTNV PGIYVYGGTI KPGHFKGKEL NIVSAFEAVG EFTSGRLSEE
DLKGVEQHAC PGSGSCGGMY TANTMSSSFE ALGMSLPYSS TMANVDAEKV ASAAESARVL
VEAVKNNLRP RDIITKKSVE NAVSVIMAVG GSTNAVLHFL AITSAAEIDW TIDDFERIRK
QVPVIVDMKP SGTYLATDLH QAGGIPQVMK ILLDGGLLHG DCITITGKTI AEVLKDVPSV
PRADQKVIRT LDNPLYKQGH LAILKGNISP EGCVAKITGL KNPSITGPAR VFDSEDDAMA
AIMAQKIKDG DIVVIRYEGP KGGPGMREML APTSALVGQG LGESVGLITD GRFSGGTWGM
VVGHVAPEAF VGGTIALINE GDSVTIDAHQ LLIQLNVSEE EIAKRRAAWK QPKPRYTRGL
LAKYASLASS ASKGAVTDLN LDLT
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