| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0658 |
|---|
| Symbol | |
|---|
| ID | 5052667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 649319 |
|---|
| End bp | 649894 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640470812 |
|---|
| Product | chorismate lyase |
|---|
| Protein accession | YP_001155440 |
|---|
| Protein GI | 145588843 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG3161] 4-hydroxybenzoate synthetase (chorismate lyase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTCACC GTAATCGTCT CCGTTCTGCA TGGAATCGAG TCGGTTCCGG TGAAGTTCAT
CGGGCGCCAC GCAAGTGGCA ACCTTGGTTA GCAGATACCG GGTCTCTGAC CCAAAAAATT
GAGCAAGCCA TCGGACAAAA ACTGCAAGTT CAGGTTTTGC GCGATTGCCC TCAAACATTA
AATAGCGACG AAAGTCGCTA TTTTCATTTC AGGATTAGAC GTTGCCGAGT ACGTGAAGTA
TTGCTCTGCG CCAACGATAT TCCTTTAGTT ATGGCTCATA GCGTCATACC TACAGCAAGC
TCTAGCGGCA GTAATCATCA AATCTTGCGA CTAGGGAAGA AACCCCTGGG TGCGGTGTTA
TTTAATCAAA CCCGCAAACA CACTAAATCA AAGCCGCCAA GAGATATTGC TCGCCTAGAT
AAAGGCAGTG AACTCTGGAA GAGATACGCA AAAAATAATG TCGCTCTCGG TTCTCCTTTA
TGGGCGCGTC GCACTCTCTA TCGCCTTAAA GGTCACCCCA TCTTGGTGAA TGAAATTTTC
TTGCCCGCCT TACTAAGCTA TTTAAAAACT AAATAG
|
|---|
| Protein sequence | MAHRNRLRSA WNRVGSGEVH RAPRKWQPWL ADTGSLTQKI EQAIGQKLQV QVLRDCPQTL
NSDESRYFHF RIRRCRVREV LLCANDIPLV MAHSVIPTAS SSGSNHQILR LGKKPLGAVL
FNQTRKHTKS KPPRDIARLD KGSELWKRYA KNNVALGSPL WARRTLYRLK GHPILVNEIF
LPALLSYLKT K
|
|---|
| |