| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0653 |
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| Symbol | |
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| ID | 5053901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 643953 |
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| End bp | 645485 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640470807 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001155435 |
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| Protein GI | 145588838 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.186257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCAT TGGAATATAT GCCACCACTG ATGTTTGGTG GCTTAGTGAT CTTTATGTTG
GTAGGCTTTC CGGTGGCCTT CTCTCTGATG GCTGCTGCCC TGTTTTTCTC TGTTATCGCC
ATTAGCGAGG GATTTTTTGG AATGCCTTTT TTACAGGCGA TTCCCCAACG AATCTTTGGT
AGCGTTTTAG CCAATGACCT TCTCTTAGCC ATTCCCTTTT TTACCTTTAT GGGCGCCATT
TTGGAGCGCT GCGGTCTCGC CGAGGAAATG CTGGACTCCA TGGGTCAATT GTTTGGTCGT
GTGCGCGGGG GCCTCGGTTA CTCAGTCATC ATCGTTGGGT TTATCTTGGG TGCCATTACA
GGCACGGTGG CTGCTCAGGT GATTGCTATG GCCATGATCT CTTTGCCTGT GATGATGCGT
TACGGCTACA ACATGCGCTA CGCCACAGGC GTTTTAGCGG CTTCTGGCAC CATTACTCAA
CTTGTTCCAC CCTCCCTTGT TCTCATTGTC TTGGCAGATC AACTCAAGAC CCAAAGCGGT
AGCGCTGATG TGGGCAGCAT GTATTTGGGT GCTTGGGGCC CTTCTCTACT GCAGATTGGT
CTTTTTGCGC TTTACACTTT CTTTCTATCC CGTATTCGCC CAGAGTATTT ACCGCCCGTG
CCAGAAAGCG AACTCACTCT CAAGGGTTGG GCTTTATGGA AAAAATGTCT CATGGGCATT
ATTCCTTCGG CTGTTCTCAT ATTCTTGGTG CTAGGTACCA TCATGACGGG TATTGCCACT
CCAACAGAGT CAGGGGCAAT GGGAGCCATG GGAGCCCTAT TGCTTGCGTG GATACGTCGA
GCAAACATTC CCAACCTCAA AGGATTAATA CAGCAAGCCT ATCAAAACAC AATGCGCATT
ACCGCCATGG TAGTGTTTAT CTTGATTGGC TCCACTTGCT TCTCGGTAGT CTTTCAAGGG
GTAGATGGTG GGCACTGGGT TGAGAATTTA TTCTCAAGTC TGCCTGGCGG CTGGATCGGA
TTTTTAATTG TCGTCAATAT ATTTGTCTTC TTTTTGGCCT TCTTCTTAGA CTTTTTTGAG
ATCGCTTTTA TCGTGGTGCC GATGCTGGCT CCGGTAGCAG TAAAACTACT TTCACCCGTC
TTGCTAGATT CCATGAATGG CAATCCGCAG GCTGCTGCCA GTGCTGCATT AGTTTGGTTT
GGCGTCATGC TTTGCGTCAA TATGCAGACT TCTTTCATGC ACCCTCCATT TGGATTTGCC
CTCTTCTACC TCAGAGGTGT TGCACCCAAA GAAGTCAAGA GTAGCGACAT TTATTGGGGC
GCCCTTCCTT GGGTTGGCCT TCAGCTCATC ATGGTGCTCG TAGTGATTGC CTTCCCTGCA
CTAGTCACTA CTTTGCTCGA TAAACCTGCT GCAGTCATTC AGAGTCAGGA TTTTAATTTC
ACAAACACAG ACGAAAATAA ACTGGAGGCC CCATCAAGCA AGATTGATGA AGATGCTCCG
GTAAATTTTC AATTAGATAA ACCGACTAAG TAA
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| Protein sequence | MIPLEYMPPL MFGGLVIFML VGFPVAFSLM AAALFFSVIA ISEGFFGMPF LQAIPQRIFG
SVLANDLLLA IPFFTFMGAI LERCGLAEEM LDSMGQLFGR VRGGLGYSVI IVGFILGAIT
GTVAAQVIAM AMISLPVMMR YGYNMRYATG VLAASGTITQ LVPPSLVLIV LADQLKTQSG
SADVGSMYLG AWGPSLLQIG LFALYTFFLS RIRPEYLPPV PESELTLKGW ALWKKCLMGI
IPSAVLIFLV LGTIMTGIAT PTESGAMGAM GALLLAWIRR ANIPNLKGLI QQAYQNTMRI
TAMVVFILIG STCFSVVFQG VDGGHWVENL FSSLPGGWIG FLIVVNIFVF FLAFFLDFFE
IAFIVVPMLA PVAVKLLSPV LLDSMNGNPQ AAASAALVWF GVMLCVNMQT SFMHPPFGFA
LFYLRGVAPK EVKSSDIYWG ALPWVGLQLI MVLVVIAFPA LVTTLLDKPA AVIQSQDFNF
TNTDENKLEA PSSKIDEDAP VNFQLDKPTK
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