Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0653 |
Symbol | |
ID | 5053901 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 643953 |
End bp | 645485 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640470807 |
Product | TRAP dicarboxylate transporter, DctM subunit |
Protein accession | YP_001155435 |
Protein GI | 145588838 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.186257 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATCCCAT TGGAATATAT GCCACCACTG ATGTTTGGTG GCTTAGTGAT CTTTATGTTG GTAGGCTTTC CGGTGGCCTT CTCTCTGATG GCTGCTGCCC TGTTTTTCTC TGTTATCGCC ATTAGCGAGG GATTTTTTGG AATGCCTTTT TTACAGGCGA TTCCCCAACG AATCTTTGGT AGCGTTTTAG CCAATGACCT TCTCTTAGCC ATTCCCTTTT TTACCTTTAT GGGCGCCATT TTGGAGCGCT GCGGTCTCGC CGAGGAAATG CTGGACTCCA TGGGTCAATT GTTTGGTCGT GTGCGCGGGG GCCTCGGTTA CTCAGTCATC ATCGTTGGGT TTATCTTGGG TGCCATTACA GGCACGGTGG CTGCTCAGGT GATTGCTATG GCCATGATCT CTTTGCCTGT GATGATGCGT TACGGCTACA ACATGCGCTA CGCCACAGGC GTTTTAGCGG CTTCTGGCAC CATTACTCAA CTTGTTCCAC CCTCCCTTGT TCTCATTGTC TTGGCAGATC AACTCAAGAC CCAAAGCGGT AGCGCTGATG TGGGCAGCAT GTATTTGGGT GCTTGGGGCC CTTCTCTACT GCAGATTGGT CTTTTTGCGC TTTACACTTT CTTTCTATCC CGTATTCGCC CAGAGTATTT ACCGCCCGTG CCAGAAAGCG AACTCACTCT CAAGGGTTGG GCTTTATGGA AAAAATGTCT CATGGGCATT ATTCCTTCGG CTGTTCTCAT ATTCTTGGTG CTAGGTACCA TCATGACGGG TATTGCCACT CCAACAGAGT CAGGGGCAAT GGGAGCCATG GGAGCCCTAT TGCTTGCGTG GATACGTCGA GCAAACATTC CCAACCTCAA AGGATTAATA CAGCAAGCCT ATCAAAACAC AATGCGCATT ACCGCCATGG TAGTGTTTAT CTTGATTGGC TCCACTTGCT TCTCGGTAGT CTTTCAAGGG GTAGATGGTG GGCACTGGGT TGAGAATTTA TTCTCAAGTC TGCCTGGCGG CTGGATCGGA TTTTTAATTG TCGTCAATAT ATTTGTCTTC TTTTTGGCCT TCTTCTTAGA CTTTTTTGAG ATCGCTTTTA TCGTGGTGCC GATGCTGGCT CCGGTAGCAG TAAAACTACT TTCACCCGTC TTGCTAGATT CCATGAATGG CAATCCGCAG GCTGCTGCCA GTGCTGCATT AGTTTGGTTT GGCGTCATGC TTTGCGTCAA TATGCAGACT TCTTTCATGC ACCCTCCATT TGGATTTGCC CTCTTCTACC TCAGAGGTGT TGCACCCAAA GAAGTCAAGA GTAGCGACAT TTATTGGGGC GCCCTTCCTT GGGTTGGCCT TCAGCTCATC ATGGTGCTCG TAGTGATTGC CTTCCCTGCA CTAGTCACTA CTTTGCTCGA TAAACCTGCT GCAGTCATTC AGAGTCAGGA TTTTAATTTC ACAAACACAG ACGAAAATAA ACTGGAGGCC CCATCAAGCA AGATTGATGA AGATGCTCCG GTAAATTTTC AATTAGATAA ACCGACTAAG TAA
|
Protein sequence | MIPLEYMPPL MFGGLVIFML VGFPVAFSLM AAALFFSVIA ISEGFFGMPF LQAIPQRIFG SVLANDLLLA IPFFTFMGAI LERCGLAEEM LDSMGQLFGR VRGGLGYSVI IVGFILGAIT GTVAAQVIAM AMISLPVMMR YGYNMRYATG VLAASGTITQ LVPPSLVLIV LADQLKTQSG SADVGSMYLG AWGPSLLQIG LFALYTFFLS RIRPEYLPPV PESELTLKGW ALWKKCLMGI IPSAVLIFLV LGTIMTGIAT PTESGAMGAM GALLLAWIRR ANIPNLKGLI QQAYQNTMRI TAMVVFILIG STCFSVVFQG VDGGHWVENL FSSLPGGWIG FLIVVNIFVF FLAFFLDFFE IAFIVVPMLA PVAVKLLSPV LLDSMNGNPQ AAASAALVWF GVMLCVNMQT SFMHPPFGFA LFYLRGVAPK EVKSSDIYWG ALPWVGLQLI MVLVVIAFPA LVTTLLDKPA AVIQSQDFNF TNTDENKLEA PSSKIDEDAP VNFQLDKPTK
|
| |