| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0630 |
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| Symbol | |
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| ID | 5053775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 619283 |
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| End bp | 620635 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640470784 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001155412 |
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| Protein GI | 145588815 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.123328 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTATTC TCACTATTGG ACTTTTGTTC GCTGTGGTGA CCCTGTTAAT TATGTTCTCG
GGGATTTCAA TTGCCTTTGC CTTAGGTATT GTGGCAATCA TTTTTATGTA TTTCTTTATG
CCAGCTTCAT CCCTTGATAC GGTTGCGCAA AATGTGTATG AGGAAATGTC CAGCATTACC
TTGATGTCCA TACCACTGTT TATCTTAAAA GGCGCTGCTA TTGGCCGTTC ACGTGCAGGT
AAGGATTTAT ATGATGCACT GCATGTTTGG ATGGGAAAGG TGCCTGGTGG TTTAGGCGTT
GCCAATGTAT TTGCATGCGC ATTATTTGCG GCAATGGCAG GTTCTAGTCC GGCAACTTGC
TCTGCAATTG GTAGTGCGGG CATTCCAGAA ATGCGCAAAC GTGGTTATTC ACCTGGTTTT
GCTGCCGGTA TTATTGCTGC TGGCGGTACC TTGGGAATTC TGTTACCACC GTCTATTACG
ATGATTTTGT ATTCAGTTGC AGCAGAGCAG TCACTGGGGC GCTTATTCTT GGCGGCAATT
GGCCCGGGAG TAATGTTGGT AATCTTTTTT TCTGGTTACA CCATTTATCG TTTCCGTAAG
GAATATTCAA CAGCATATGA AGCTTACGAG CTTAATAAGA CTCCCAGTCC GATTCTAGAT
CGCCAAACAT ACACTATGCA ACAAAAGATG AGCTCCTTAC CAAGAGTTCT TCCTTTCTTG
ATATTGTTAA TTGGTGTGAT GGTTGCCTTG TATGGTGGCT ATGCTACTCC CGCAGAAACT
GCGGGATTGG GAGCGGTATT CGCTTTCTTA TTAATTGCTG TGATATATAA GATGTGGCGC
TTCAAGGATT TGTATCCATT GCTTGATGTC ACGATAAGAG AGTCTGCGAT GCTGATGTTC
ATTATCGGCA TGTCCTTGTT ATTTGCTAAC GTCATGAGCT ACCTCCATCT TAGTCAATCT
GCTGCGCAAG CTATTGTTGA CTTAGGGGCT TCTCGATGGG TGTTGTTGGC TGCAATCTTA
GTAATGGTAA TTGTGCTGGG CTTTTTCTTG CCGCCCGTCT CTATTATTTT GATGACCTCT
CCAATCTTCT TGCCGCCTTT GCGTGCGGCT GGTTTTGACT TAATTTGGTT TGGTGTAGTA
ATGACGATCG TGATGGAGAC TGGTTTGATA CATCCACCAG TTGGACTTAA TATTTTTGTC
ATTAAAAATA TTGCTCCTGA TATTACCTTG ACCGAAATTA TTAATGGTGT ACTGCCTTTT
GTAGTGATCA TGCTCCTCTC AGTAGTGTTA CTTTGTGTAT TCCCGGGAAT AGCCACGGGT
TTATCCGACT GGGTAATGGG CGCACCTCTT TAG
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| Protein sequence | MSILTIGLLF AVVTLLIMFS GISIAFALGI VAIIFMYFFM PASSLDTVAQ NVYEEMSSIT
LMSIPLFILK GAAIGRSRAG KDLYDALHVW MGKVPGGLGV ANVFACALFA AMAGSSPATC
SAIGSAGIPE MRKRGYSPGF AAGIIAAGGT LGILLPPSIT MILYSVAAEQ SLGRLFLAAI
GPGVMLVIFF SGYTIYRFRK EYSTAYEAYE LNKTPSPILD RQTYTMQQKM SSLPRVLPFL
ILLIGVMVAL YGGYATPAET AGLGAVFAFL LIAVIYKMWR FKDLYPLLDV TIRESAMLMF
IIGMSLLFAN VMSYLHLSQS AAQAIVDLGA SRWVLLAAIL VMVIVLGFFL PPVSIILMTS
PIFLPPLRAA GFDLIWFGVV MTIVMETGLI HPPVGLNIFV IKNIAPDITL TEIINGVLPF
VVIMLLSVVL LCVFPGIATG LSDWVMGAPL
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