| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0628 |
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| Symbol | |
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| ID | 5053505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 617727 |
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| End bp | 618761 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640470782 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001155410 |
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| Protein GI | 145588813 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0027279 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGATA CAAAAGAAAT TAGTCAATTG CGCCGTTCAC TATTGCTGGG CGCTGCAGGT
GCATCAATTG CGGGATACGA CTTAAGCGCA TGGGCCCAAA CTGGTGCTAA AAGCCTAAAA
ATTTCCCATC AATTTCCAAG TGGCACTGAT TTCCGTGATC GCCTCTGCAA GAAATTTGCC
GATGAAGTAA GCAAGAAAAC AAATGGTGAA TTGAAGTTCG ACGTTTATCC ACAGTCTTCA
CTAATGAAAA CCAATGCTCA ATTTAGCGCC TTGCGTAAGG GAGCCTTAGA CTTTAGCTTC
TATCCCATGC CCTATGCAGG AGGAGAGGTT GTTGAAGCTA ATATTGGTTT GATGCCAGCT
TTGGTTAATA GCTATGAGCA AGGCGCCAAA TGGAAAAACG CTGAAGTAGG TAAGATTTTG
AATAAGGTAA TGGAATCCAA GGGTATCGTG ATAGTAAGTT GGGTATGGCA GGCTGGCGGT
GTTGCCACCC GTTCTGGTCC AATCGTAGTT CCTGATGACA TCAAAGGCGT AAAAGTTCGA
GGTGGAAGCC GTGAATTTGA TGCCATGCTC AAAGCGGCTG GCGGATCAGT GATGACATCT
ATTCCCTCTA ACGAGATTTA TCAAGCTGTG CAAACTGGCT CATTAGATGC GGCTTACACC
TCTTCAGCCA GTTTAATGTC ATTCAAATTG GCTGAGCTCA CCAAAAACTT TACCTCTGCA
AAAAATAAAT CCTATTGGTA CATGTTGGAG CCGTTGATGA TGTCAAAAAC AATATTTGAT
TCTTTGACAC CAAAACAGCG CGACGTGATT ATGGCGGTTG GCACCGACAT GGAAAAGTTC
GGAACTGAAC AGGCTAAATT AGATGATATT GATGCTTCCA TTGCTTTTGC AAAGGCTGGC
AATAAAGTGT TCGAAATGGA CATGTCGGTG ATAGATAAAT GGAAAGCCGT TGCCAAGAAT
TCTGCCTGGA AGGAGTTCTC GGAGCGAAAT GAAACTTGTG CAGCAATGAT GCGTTCTGCC
GAGAAGATTT CATAG
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| Protein sequence | MEDTKEISQL RRSLLLGAAG ASIAGYDLSA WAQTGAKSLK ISHQFPSGTD FRDRLCKKFA
DEVSKKTNGE LKFDVYPQSS LMKTNAQFSA LRKGALDFSF YPMPYAGGEV VEANIGLMPA
LVNSYEQGAK WKNAEVGKIL NKVMESKGIV IVSWVWQAGG VATRSGPIVV PDDIKGVKVR
GGSREFDAML KAAGGSVMTS IPSNEIYQAV QTGSLDAAYT SSASLMSFKL AELTKNFTSA
KNKSYWYMLE PLMMSKTIFD SLTPKQRDVI MAVGTDMEKF GTEQAKLDDI DASIAFAKAG
NKVFEMDMSV IDKWKAVAKN SAWKEFSERN ETCAAMMRSA EKIS
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