| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0604 |
|---|
| Symbol | |
|---|
| ID | 5052866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 590538 |
|---|
| End bp | 591959 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640470757 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001155386 |
|---|
| Protein GI | 145588789 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACAAATA CTGCTACTGA AATAACTTCT ACTACAGGGG CTGGCGATCA AGCTACCCCT
AGTGATAACA CTCCAGCAAC AATCACCTTT GCTGATTTTG GCTTAGACCC GAAAATTCAA
AAAGCGGTTG CTGAACAGGG TTACAGCATA CCGACTCCGA TTCAAGCGCA ATCTATTCCG
CACGTGTTGG CGGGAAGCGA TTTGATGGGC GCCGCCCAAA CAGGTACTGG TAAAACCGCA
GCCTTTGTAT TGCCGATCAT TCAACAGATT CTGCGTCACG CTAGCAATAG CGCCTCACCA
GCACGCCATC CAATTCGCGC ACTCGTACTG ACACCAACGC GAGAGTTGGC AGTGCAGGTA
GCAGAGAATG CGGCGAGCTA CTCCAAACAT ACTGATTTGC GCGCTGCAGT TGTTTATGGC
GGCGTGGATA TGAAAGAGCA AGTAGCCATA CTGCGTAATG GCGTAGAGAT TTTGATTGCT
ACCCCAGGAC GATTGTTAGA TCACATTGGC TCTAAGGTGG CCAATTTATC CCAGGTTGAA
ATCTTGGTAT TGGATGAAGC AGATCGCATG TTGGATATGG GCTTTTTGCC TGACTTGCAG
CGCATCATCG ATTTAATTCC AGCGCAAAGA CAAACATTGT TGTTCTCTGC GACTTTCTCC
CCAGAGATTA AGAAGCTAGC ACAAAGCTAT TTACGTACTC CGGTAACGGT TGAAGTGGCT
CGTCAAAATG CCGCTGCTGA TACTGTAAAG CAAGTAGTGC ATATGGTGTC TTCAGGCGAT
AAGCAACGCG CAATTGTGAA AGTACTAGAA GCGCGCACGC GTCTAGGCTT GTCTCGACAA
TGCATCATCT TTACCAATAG CCGTTTGGGT TGCGCTAAGT TAGCGCGTGC CTTAGAGCGC
GATGGTATTA AAGCAGGTGC AATTCATGGA GATAAGAGTC AGGGTGAGCG TACTTTAACT
TTGGATGCTT TTAAATCCGG CGCAATCGAA GCTTTGGTAG CAACCGATGT TGCTGCTCGC
GGTTTGGATA TTCCTGATAT GCCTTGCGTT ATTAATCACG AACTTCCTTA TAACGCTGAA
GATTTTATTC ACCGTATCGG ACGCACTGGT CGTGCTGGTA GTAAAGGTGA TGCGATTGCT
TTGGTTGATG CGAGCGAGAA ACGCTTGCTC GATGATATTG AAAAGTTAAT GAAGCGTAAG
TTAGATGTGA AGCCATTGCC TGAAGGAGCT CCCTCATCCA GTCGCCCATC ATCAAGTGCT
GCACCAACCA AAATGTCTGA CCCTTTCTTC TATATGCCTT ATGAGCCTGG CGCTGCTCCT
GCAGATTCTG CTGGAGCTAC AAAGACTGAA GAGAAAAAAG CCGGCATCAC GCCTGCTAAG
CCAGCAGTCG GCGCCCTATT AGGCGGCTTT AAAAAGAAAT AA
|
|---|
| Protein sequence | MTNTATEITS TTGAGDQATP SDNTPATITF ADFGLDPKIQ KAVAEQGYSI PTPIQAQSIP
HVLAGSDLMG AAQTGTGKTA AFVLPIIQQI LRHASNSASP ARHPIRALVL TPTRELAVQV
AENAASYSKH TDLRAAVVYG GVDMKEQVAI LRNGVEILIA TPGRLLDHIG SKVANLSQVE
ILVLDEADRM LDMGFLPDLQ RIIDLIPAQR QTLLFSATFS PEIKKLAQSY LRTPVTVEVA
RQNAAADTVK QVVHMVSSGD KQRAIVKVLE ARTRLGLSRQ CIIFTNSRLG CAKLARALER
DGIKAGAIHG DKSQGERTLT LDAFKSGAIE ALVATDVAAR GLDIPDMPCV INHELPYNAE
DFIHRIGRTG RAGSKGDAIA LVDASEKRLL DDIEKLMKRK LDVKPLPEGA PSSSRPSSSA
APTKMSDPFF YMPYEPGAAP ADSAGATKTE EKKAGITPAK PAVGALLGGF KKK
|
|---|
| |