Gene Pnuc_0536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0536 
Symbol 
ID5052108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp526008 
End bp526664 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content44% 
IMG OID640470690 
ProductDNA polymerase III subunit epsilon 
Protein accessionYP_001155320 
Protein GI145588723 
COG category[L] Replication, recombination and repair 
COG ID[COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCGAT TGGTACCAAG CCCATTAAGG AAGTTCTATC ACGCCATCTG GCGTGAATGG 
CTCATCTATC ACCTGGCAGA TGAACGCTAT AAATTCATGT TTAATCCGCC ACCGCCAAAT 
GAATGGGTAG TCATTGATTG CGAAACGACT GGCCTGAATG TAGCCCAAGA CCAAATCATT 
TCTATTGGTG CCGTCAAAAT AGTTGGTAAT CAGCTCATAA CGAGTGAACG GCTAGAGCTT 
CTTGTTAAAC CAGATAAAGA AGTCTCAGCA GAGAGCGTCA AAATTCATCG GCTACGGGAA 
CTCGATATTG CAAATGGACT TGATCCAGAA GTCGCAGTAG CAAAATTAAT GCAATTTATT 
GGAAGCCGCC CGATTGTGGG CTACTACCTG GAGTTTGATA TGGCCATGCT ACACAAGATC 
ATCTGGCGCA TGCTAGGGCA AGGATTGCCG CAACCTAAGA TTGAAGTATC GGCTATGTAC 
TATGAATATA AGAATGCTCA GCTCCCCATT AATCTTCGCG GACAGATGAT TGATCTTCGT 
TTTGATACGC TGATGAAGGA TTTAAACCTG CCGGTACGAG ATGCACATGA TGCATTGAAT 
GATGCCGTAA TGACTGGGAT GGCTTTTATT AAGCTTCGTC AATTGCTCAA ACCATAA
 
Protein sequence
MNRLVPSPLR KFYHAIWREW LIYHLADERY KFMFNPPPPN EWVVIDCETT GLNVAQDQII 
SIGAVKIVGN QLITSERLEL LVKPDKEVSA ESVKIHRLRE LDIANGLDPE VAVAKLMQFI 
GSRPIVGYYL EFDMAMLHKI IWRMLGQGLP QPKIEVSAMY YEYKNAQLPI NLRGQMIDLR 
FDTLMKDLNL PVRDAHDALN DAVMTGMAFI KLRQLLKP