Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0525 |
Symbol | |
ID | 5052571 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 515948 |
End bp | 516535 |
Gene Length | 588 bp |
Protein Length | 195 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640470679 |
Product | oligoribonuclease |
Protein accession | YP_001155309 |
Protein GI | 145588712 |
COG category | [A] RNA processing and modification |
COG ID | [COG1949] Oligoribonuclease (3'->5' exoribonuclease) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.214811 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGAAC AAATCAATAC GGCAACAGCC AAAACAGCCT CACCGAGTGA GCATTTAATC TGGGTGGATA TGGAGATGTC AGGCCTGAAC CCTGAAACTG AGCGAATTTT AGAAATCGCC ATTATTGTGA CGGATGCCCA CCTGAATACG ATTGCCACGG CCCCTGTCTG GGTGGTTCAC CAAGACGATG CAATCTTGGA TGCGATGGAT GCCTGGAATA AGGGTACCCA TGGCCGCTCT GGCTTGATTG ATAAGGTTAA GACTTCGACG TTAGACGAGG CTGCGGTGGA GGCTGAATGC ATTGCCTTTT TAAAGCAATA TATCAAGGCC GGTATTGCCC CTATGTGCGG TAATACGATA GGTCAGGACC GCCGCTTTAT GGCCAAGTAC ATGCCAAAAC TAGAGGCTTA TTTTCATTAT CGAAATGTGG ATGTGTCAAC TTTGAAAGAG CTTTGTAAAC GCTGGCATCC AGAGTTAGTA AAAGGCTTTA CAAAAAATCA AGCACACACA GCTTTGGCTG ATATTGAAGA ATCTATTGAA GAGCTCAAAT ACTATCGAGA GAAGTTTATT GTTCCGTTGC CACAATAA
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Protein sequence | MSEQINTATA KTASPSEHLI WVDMEMSGLN PETERILEIA IIVTDAHLNT IATAPVWVVH QDDAILDAMD AWNKGTHGRS GLIDKVKTST LDEAAVEAEC IAFLKQYIKA GIAPMCGNTI GQDRRFMAKY MPKLEAYFHY RNVDVSTLKE LCKRWHPELV KGFTKNQAHT ALADIEESIE ELKYYREKFI VPLPQ
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