Gene Pnuc_0523 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0523 
Symbol 
ID5053634 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp513663 
End bp514676 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content46% 
IMG OID640470677 
Productribosome small subunit-dependent GTPase A 
Protein accessionYP_001155307 
Protein GI145588710 
COG category[R] General function prediction only 
COG ID[COG1162] Predicted GTPases 
TIGRFAM ID[TIGR00157] ribosome small subunit-dependent GTPase A 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.22589 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACAAT TTCGCGCGCT ATTAACTGCT TCTTATGGAA GGCATTACTT AGCGCAGCGT 
TTGATTGCAG ATGCTGCAGG TAACGAATCT CCAAGCGGTC CTTTAATTCA AGTCAGTACA 
CCTGCTAAGC AACATATTGG TGCCGTTGGT GATCGCATGC TGCTGGAAAT GACTTCAGTA 
GACCAAGCGC GCATTATTGA AATAGAACCT CGTGAAAACT TGCTCTATCG ATCAGATGCT 
TTTAAGAGCA AATTGATTGC GTCTAATGTC GATCAAATTC TCATTGTGCT AGCAACACAG 
CCCGCTTTCT CACCAGATCT CCTGGGAAGA GCAGTAGTGG CAGCAGAGAC CAATCAAATC 
GGTCTGCATA TCCTACTCAA TAAATGTGAT CTGCCAGACA ATATAGAGCA TGCTCGCAAA 
ATCATTGCGC CTTATGCGCG TATGGGCTAC CCCGTTAGTG AAGTCTCTGC TAAATTTGAT 
CCGGCATCGA TCGATGCGCT ACAGTCTGCC CTCAAAGGCA AGGTCTCTGT TTTTGTTGGT 
CAATCTGGAA TGGGTAAATC CAGCTTGTTA AATGCCTGGG TACCCAATGC TGCTGCATTG 
ACTCAAGAAT ATTCCGTTCG ATTGGATACC GGAAAACACA CTACGACTGC CTGTCGGTAT 
TTTGAGTTGC CCGAATCATG GGGTAGAGAT GCGTCTGGCA AGCTCGGAGC GCTGATTGAC 
TCGCCAGGCT TTCAGGAATT CGGCTTAGCG CATATGTCGG TCAGTGAACT CCAGCATGCT 
TTTAGAGAAT TTAAAGACTT ACTAGGCAAG TGTCGCTTTC ATAATTGCGC ACATCAATCA 
GAACCAGATT GCGCTGTACG CGCAGCAGTA GATAGAAATG AAATAGCGCC AGAAAGACTG 
GCGCTATTTA GACAACTTCG TTCGGACTCA AAAACTGCCG ATACTCAAAT TCAGGGAATT 
AGCCAAGCCA AAGAGCGATG GTCAGCATTA GCAACAAAGC CATCCAAGCG ATAA
 
Protein sequence
MEQFRALLTA SYGRHYLAQR LIADAAGNES PSGPLIQVST PAKQHIGAVG DRMLLEMTSV 
DQARIIEIEP RENLLYRSDA FKSKLIASNV DQILIVLATQ PAFSPDLLGR AVVAAETNQI 
GLHILLNKCD LPDNIEHARK IIAPYARMGY PVSEVSAKFD PASIDALQSA LKGKVSVFVG 
QSGMGKSSLL NAWVPNAAAL TQEYSVRLDT GKHTTTACRY FELPESWGRD ASGKLGALID 
SPGFQEFGLA HMSVSELQHA FREFKDLLGK CRFHNCAHQS EPDCAVRAAV DRNEIAPERL 
ALFRQLRSDS KTADTQIQGI SQAKERWSAL ATKPSKR