| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0500 |
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| Symbol | rpsA |
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| ID | 5052498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 491964 |
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| End bp | 493637 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640470654 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001155284 |
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| Protein GI | 145588687 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.170768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAAT CATTTGCAGA ATTATTTGAA GAATCATTAA CCCGATCGAA TATGAAGACC
GGCCAAGTCA TTTCGGCTGA AGTCCTTCGC ATCGACCATA ACTTCGTCGT TGTTAACGCT
GGCTTAAAGT CTGAAGCGTT TATTCCTGTT GAAGAATTCC ATAACGACGC TGGCGAGATT
GAAGTAGCTC CTGGCGATTT CGTTTCTGTT GCTATCGACG CTCTTGAAAA CGGCTATGGC
GACACCATCC TCTCCCGTGA TAAGGCTAAG CGCCTCGCAT CATGGTTGAA TTTGGAAAAA
GCTCTCGAGC AAGCTGAGAT CGTTACTGGT ACTGTTACCG GTAAGGTTAA AGGCGGCTTG
ACTGTGATGG TTAACGGTAT CCGCGCATTC TTGCCTGGAT CACTTGTTGA TACACGTCCA
ATCAAAGACA CCAGCCCTTA CGAAGGTAAG ACGATGGAGT TCAAGGTTAT CAAGCTCGAC
CGTAAGCGTA ACAACGTAGT GTTGTCACGT CGCGCAGTTG TTGAAGCTAG CCAAGGTGAA
GAGCGTGCTA AGTTGATGTC TAACCTTAAA GAAGGCGCAG TGGTTACTGG CCTTGTTAAG
AACATCACAG ATTACGGCGC GTTCGTTGAC CTCGGTGGTA TCGATGGCCT CTTGCATATT
ACCGATTTGG CATGGCGTCG CGTGCGTCAC CCAAGCGAGA TGTTGACTGT TGGTCAAGAA
GTTACAGCAA AGATCTTGAA GTTCGATCAA GAGAAAAACC GTGTTTCACT CGGCGTGAAA
CAACTTGGTG ATGATCCATG GGTTGGTATC GCTCGTCGTT ACCCTCCAAA TACCCGTTTA
TTCGGTAAAG TAACCAACTT GACTGATTAC GGTGCATTCG TTGAAATCGA ATCTGGTATC
GAAGGTTTGG TACACGTTTC TGAAATGGAT TGGACCAACA AGAACGTTGC TCCAAGCAAA
GCTACTGCAT TAGGAACCGA AGTTGAAGTA ATGGTTCTGG ATATTGATGA AGACAAGCGT
CGTATTAGCT TGGGCATCAA GCAGTGCAAA GCAAATCCAT GGGAAGAGTT TGCACGTTCA
CAGCAAAAAG GCGACAAGCT TTCTGGTGCG ATCAAGTCTA TTACTGACTT CGGCGTATTC
ATTGGCTTGC CTGGCGGTAT CGACGGTTTA GTTCACCTCT CAGACCTTTC ATGGAATGAG
CCAGGCGAAG AAGCTGTTAA GAAATACAAA AAAGGTGATG AAGTTGAAGC CACTGTATTG
GCAATTGATG TTGAGAAAGA GCGTATCTCT CTCGGTATTA AGCAATTGTC TGGTGACCCA
TTCAACAACT ACACATCTGT TAGCGACAAG GGTAGCCTAG TAACTGGCAC TGTGAAGGCT
GTTGATGCTA AGGGTGCAAC TATTCACTTA GCTGATGAAG TTGAAGCTTA CTTGCGCGCT
TCTGAGATCT CAACCGATCG CGTTGAAGAT GCACGCAATG TATTGAAAGA AGGCGACAGC
GTTACTGCCA TGATCATTAA TATTGATCGT AAGTCACGCG TAATCAATCT CTCAATCAAA
GCAAAAGACA GCTCTGATCA ACAAGATGCA ATGAGCAAGC TCCAAGGTGA TGCGCAGTCT
GGCACAACCA ATTTGGGTGC TTTGTTGAAA GCAAAATTGG ACAATCAAGG CTAA
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| Protein sequence | MSESFAELFE ESLTRSNMKT GQVISAEVLR IDHNFVVVNA GLKSEAFIPV EEFHNDAGEI
EVAPGDFVSV AIDALENGYG DTILSRDKAK RLASWLNLEK ALEQAEIVTG TVTGKVKGGL
TVMVNGIRAF LPGSLVDTRP IKDTSPYEGK TMEFKVIKLD RKRNNVVLSR RAVVEASQGE
ERAKLMSNLK EGAVVTGLVK NITDYGAFVD LGGIDGLLHI TDLAWRRVRH PSEMLTVGQE
VTAKILKFDQ EKNRVSLGVK QLGDDPWVGI ARRYPPNTRL FGKVTNLTDY GAFVEIESGI
EGLVHVSEMD WTNKNVAPSK ATALGTEVEV MVLDIDEDKR RISLGIKQCK ANPWEEFARS
QQKGDKLSGA IKSITDFGVF IGLPGGIDGL VHLSDLSWNE PGEEAVKKYK KGDEVEATVL
AIDVEKERIS LGIKQLSGDP FNNYTSVSDK GSLVTGTVKA VDAKGATIHL ADEVEAYLRA
SEISTDRVED ARNVLKEGDS VTAMIINIDR KSRVINLSIK AKDSSDQQDA MSKLQGDAQS
GTTNLGALLK AKLDNQG
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