| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0438 |
|---|
| Symbol | |
|---|
| ID | 5053116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 427364 |
|---|
| End bp | 428674 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640470591 |
|---|
| Product | homoserine dehydrogenase |
|---|
| Protein accession | YP_001155222 |
|---|
| Protein GI | 145588625 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0460] Homoserine dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGA TTCAAGTAGG TCTATTAGGC ATTGGCACCG TAGGTGGTGG CGTATTCACT
GTTCTAGAGC GTAACCAAGA CGAAATTCAG CGTCGCGCAG GTCGCGGCAT TCGTATTCAT
ACCGTTGCCG ACCTAAATGT TGAGCGCGCC AAGGAATTGG TAAAAGATCG TGCGCAAGTA
GTGAGCGATG CTCGCGCTGT CATCAATAAT CCAGAGATTG ATATTGTTGT TGAGCTCATT
GGCGGCTATG GCATCGCTAG AGATTTAGTG CTCGAGGCTA TTGCAGCGGG TAAGCATGTG
GTTACTGCTA ATAAGGCCTT GATTGCGGTG TATGGCAATG AGATTTTTAA AGCGGCCCAT
GCTAAAGGCG TGATGGTGGC GTTCGAAGCA GCAGTGGCAG GCGGTATTCC GATTATTAAA
GCCTTGCGCG AAGGCTTAAC AGCCAATCGC ATCGAATGGA TTGCCGGAAT CATTAACGGC
ACTACCAACT TTATTCTCTC TGAGATGCGT GACAAAGGCC TGGACTTTGA GACTGTACTC
AAGGAAGCGC AACGCCTGGG ATATGCCGAG GCAGACCCTA CGTTCGATAT TGAGGGTGTT
GATGCTGCTC ATAAAGCAAC CATCATGAGT GCAATTGCAT TTGGTATTCC AATGCAATTT
GAAAAAGCAC ACGTAGAAGG TATTACTAAA TTAGCAGCGA TAGATATTCG TTACGCTGAG
CAATTAGGCT ATCGCATTAA GTTACTCGGA ATTGCTAAGA AAACTTCATC CGGCGTTGAG
CTGCGCGTTC ACCCAACCTT AATTCCATCA AAGCGTTTGA TTGCGAATGT TGAAGGTGCC
ATGAACGCAG TTCAAGTATT TGGGGATGCA GTTGGAACGA CTTTGTATTA CGGTAAAGGC
GCTGGCTCTG AGCCAACGGC TTCTGCAGTG ATTGCGGATT TGGTAGATAT CACGCGTTTA
TTAAGTGCGG ATGCTGAGCA CCGTGTTCCC TATTTGGCCT TCCAGCCTGA TGCCGTTCAA
GATACACCAG TACTGCCAAT TGGTGAGATC ACTACCAGTT ACTACTTGCG GATGCGGGTT
GCCGACCAAG CGGGCGTGTT GGCGGACATC ACCAAGATTT TGGCTTCTCA TGGAGTATCA
ATTGATGCGC TGTTGCAAAA AGAGGCTGAT GAAGGCGAAA GTCAAACCGA TTTAGTGGCT
CTGACTCACG AGACTAAAGA AAAAAATATG CTGGCTGCTA TCCAGGAGAT TCAGGATCTC
AAAACAGTCG CAGGTGAAGT GGTGAAGATT CGTTTAGAAA ATCTGTCTTA A
|
|---|
| Protein sequence | MKPIQVGLLG IGTVGGGVFT VLERNQDEIQ RRAGRGIRIH TVADLNVERA KELVKDRAQV
VSDARAVINN PEIDIVVELI GGYGIARDLV LEAIAAGKHV VTANKALIAV YGNEIFKAAH
AKGVMVAFEA AVAGGIPIIK ALREGLTANR IEWIAGIING TTNFILSEMR DKGLDFETVL
KEAQRLGYAE ADPTFDIEGV DAAHKATIMS AIAFGIPMQF EKAHVEGITK LAAIDIRYAE
QLGYRIKLLG IAKKTSSGVE LRVHPTLIPS KRLIANVEGA MNAVQVFGDA VGTTLYYGKG
AGSEPTASAV IADLVDITRL LSADAEHRVP YLAFQPDAVQ DTPVLPIGEI TTSYYLRMRV
ADQAGVLADI TKILASHGVS IDALLQKEAD EGESQTDLVA LTHETKEKNM LAAIQEIQDL
KTVAGEVVKI RLENLS
|
|---|
| |