| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0415 |
|---|
| Symbol | |
|---|
| ID | 5053814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 405332 |
|---|
| End bp | 407194 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640470566 |
|---|
| Product | excinuclease ABC, C subunit |
|---|
| Protein accession | YP_001155199 |
|---|
| Protein GI | 145588602 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
|---|
| TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00263018 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCCGGGGG TATATCGCTT TTTTGACGAA GCAGGGAATA TTTTGTATGT TGGCAAAGCT
CGTAATCTCA AAAAGCGGGT TTCTAGTTAT TTTCAGCGTA CACAGCTCTC GCCGCGCATT
GAATTAATGG TGGGCAAAAT TGCCCGCTAT GAAACAACGG TAACACGGAC AGAAACTGAA
GCTCTTATTC TAGAGAACAA TCTCATTAAA GAGTTAGCGC CCCCATTTAA TATTTTGTTT
CGGGATGACA AGTCTTATCC CTACGTGATG TTAACGGGTC ACCAATTTCC ACGTTTGGCG
TCTTATCGAG GCAAGGTCGA TAAGCGCAAT CATTATTTCG GACCCTTCCC GAATAGTTGG
GCAGTACGCA ATAGCGTACA AATTCTGCAA AAAGTGTTTC GCCTGAGAAC GTGCGAAGAC
TCCGTCTTTA AAAATCGCAG CCGCCCGTGT TTGCTGCATC AAATTCATCG CTGTAGCGCT
CCTTGTGTTG GGCGTTTAAG TGTGGAGCAA TATAGTCAAG ATGTAGCACA AGCAACGCGC
TTTTTAGAGG GCGACCATAG CCGAGTTTTA TCCGAATTAG AAAAAGAGAT GCATGTGCAT
AGTGAAGCCA TGGAGTTTGA GATGGCCGCT ATATTGCGTG ATCGAATCGC TGATCTTTCT
AGTGTCTTAC AACAGCAAGC AATGGATACG GTTGCCGAAG GAGAGGGTGA TGTAGACGTT
ATTGCGGTTG CTCTGATGGA GGGTATGGTC TGCGTGAACT TAGCAATGGT GCGTGGCGGT
AGGCATCTTG GAGATAGGGC TTACTTCCCC AAGGGCTTGC GCTCTTCCTC CGGTGAATTG
CCATCGCCAA CAGAAATTTT AGAAGCCTTC ATCGCTCAGC ATTATTTAGA TGAGACCGCT
GGAGAAGAGG TGTCGGTAAC GAATTTAATT CCACCGGTCA TTGTGATGAA TCATGCCTTG
CAGGCAGCCG GTGATGAAAT TACAACTCTG AGTGAGAGTC CGCCAGAAGA CTTACATGAT
TTATTAAATG CTCAGGCTGG TCGAAAAATT ACCTTCTTAC ATCAGCCCCA AGGCCAACGA
CGCCATTGGC TTGCGATGGC AGAAGGCAAT GCCAAGATTG CTTTAACAAA ACGCTTGGTA
GAGACAGGCG GTCAGTTAGC TCGGGCACGT GCCTTAGTGG ATATTCTGAG TTTGGACTTA
GAGGGCTTAG AACATTTGCG TATTGAATGT TTTGATATTA GCCATACTTC AGGTGAGGCT
ACTCAAGCAT CTTGTGTTGT CTATGCAAAA AATGCCATGC AGTCGAGTGA GTATCGTAGA
TTTAATATCA ATGACATTAC CCCTGGCGAT GACTACGCAG CAATGCGCCA GGTATTACAA
AGACGGTATG CCAATTTCCA GGAACTTCCC CCAGAAAAAA TGCCACAAGT CATTTTGGTT
GATGGCGGTA AAGGCCAGGT AGAAATGGCT CGTCAAGTGC TTACAGAATT TGGTATGGAT
GTTAGTCTGA TTGTTGGTGT CGCCAAAGGG GAGGGTCGAA AAGTTGGCCT AGAGACCTTG
ATTTTTGCTG ATGGTCGCGA ACCCCTGGAG CTTGGTATTG ATAGTGCTGC CTTGTTATTG
GTTGCCCAAA TTCGAGATGA GGCACATCGG TTTGCCATTA CCGGCATGCG TGCCAAGCGT
GCAAAAGCAA GAACAGTCTC TCGTTTAGAG GAGATCGAGG GTATTGGGGC CAAGCGACGA
CAGAAGTTAC TTGCTCGCTT TGGTGGTCTG AAAGGGGTAG CTAATGCCAG TATTGAAGAG
ATTGCTAGTG TGGAGGGGGT TTCTCTTACT CTTGCAGAGC AGATTTATCG TCAACTCCAT
TAG
|
|---|
| Protein sequence | MPGVYRFFDE AGNILYVGKA RNLKKRVSSY FQRTQLSPRI ELMVGKIARY ETTVTRTETE
ALILENNLIK ELAPPFNILF RDDKSYPYVM LTGHQFPRLA SYRGKVDKRN HYFGPFPNSW
AVRNSVQILQ KVFRLRTCED SVFKNRSRPC LLHQIHRCSA PCVGRLSVEQ YSQDVAQATR
FLEGDHSRVL SELEKEMHVH SEAMEFEMAA ILRDRIADLS SVLQQQAMDT VAEGEGDVDV
IAVALMEGMV CVNLAMVRGG RHLGDRAYFP KGLRSSSGEL PSPTEILEAF IAQHYLDETA
GEEVSVTNLI PPVIVMNHAL QAAGDEITTL SESPPEDLHD LLNAQAGRKI TFLHQPQGQR
RHWLAMAEGN AKIALTKRLV ETGGQLARAR ALVDILSLDL EGLEHLRIEC FDISHTSGEA
TQASCVVYAK NAMQSSEYRR FNINDITPGD DYAAMRQVLQ RRYANFQELP PEKMPQVILV
DGGKGQVEMA RQVLTEFGMD VSLIVGVAKG EGRKVGLETL IFADGREPLE LGIDSAALLL
VAQIRDEAHR FAITGMRAKR AKARTVSRLE EIEGIGAKRR QKLLARFGGL KGVANASIEE
IASVEGVSLT LAEQIYRQLH
|
|---|
| |