Gene Pnuc_0411 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0411 
Symbol 
ID5053417 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp401635 
End bp402708 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content47% 
IMG OID640470562 
Productglycoside hydrolase family 3 protein 
Protein accessionYP_001155195 
Protein GI145588598 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1472] Beta-glucosidase-related glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAAAG CGACTATGAA TCCAGGGCCA ATTACATTGG ATGTGGTGGG TCAGGTCTTA 
AATGCAGAAG ACCGTCGCCG GATCTTGCAT CCCCTCACTG GTGGCGTGAT TTTATTTGGC 
CGTAATTTTG CCAATCGCAA GCAGCTTACT AAGCTCACCG CAGATATTAA AAAGCTTCGC 
CCTGATGTCT TGATTTCGAT TGACCATGAA GGTGGGCGAG TTCAGCGCGC TAAGACCGAT 
GGCTTTACTC ATTTACCCGC TATGCGTAAA TTAGGAGAGT TGTGGGGCGC TAAACATCAT 
TCTTCTCATG CCGCTGAATC AGCTGCTCTA GCAATGGCAG CAGCAACTGC TTGTGGTTAT 
GTTTTGGCAG CTGAGCTGCG AGCATGTGGC GTTGACTTTA GCTTTACACC AGTACTCGAT 
TTAGATTTTG GTCGTAGCGG CGTCATTGGT GACCGTTCAT TTAGTCGTGA TCCCCAAATC 
GTATTTGTAT TAGCAAAGAG TCTGAATGAA GGTTTACGTT TAGGCGGAAT GGAGAATTGC 
GGCAAGCACT TCCCGGGACA TGGTTGGGCA GAGGCGGATT CTCATGTGGC GATTCCAGTG 
GATGAACGTT CTCTTCAAGA AATTCTGAAT GATGATGCTA AGCCCTATGA GTGGCTAGAT 
TTAAGCCTTG CTGCAGTGAT GCCGGCCCAT GTGATTTACC CTAAGGTTGA TAGTAATCCT 
GCAGGCTTCT CAAAAATCTG GCTACATTCC ATTTTGCGCC AAGAATTAGG TTTTGAGGGC 
GTGATCTTTA GTGACGATCT CTCAATGGAG GGTGCAAGTG TTGCTGGATC AGTGGTTAAA 
GGCGCTGAGC TGGCCTTAGA GGCGGGTTGT GATGCAGTGT TGATCTGTAA TCGACCTGAT 
TTGGCAGATC AGCTTCTTAG CAAGCTCAAA GTCTCCAAAA CCAAGCTGGA CGAGTCTAAA 
AGGCGCTTAA ATAGGCTCAT GCCAACTTCC CCTGCAGTAG CCTGGGATTT ATTGCAGAAT 
GAGCCAGAGT ATCAGCATGC TAAAGGTTTA CTCAAGCAGT TCAATTTAAT TTGA
 
Protein sequence
MSKATMNPGP ITLDVVGQVL NAEDRRRILH PLTGGVILFG RNFANRKQLT KLTADIKKLR 
PDVLISIDHE GGRVQRAKTD GFTHLPAMRK LGELWGAKHH SSHAAESAAL AMAAATACGY 
VLAAELRACG VDFSFTPVLD LDFGRSGVIG DRSFSRDPQI VFVLAKSLNE GLRLGGMENC 
GKHFPGHGWA EADSHVAIPV DERSLQEILN DDAKPYEWLD LSLAAVMPAH VIYPKVDSNP 
AGFSKIWLHS ILRQELGFEG VIFSDDLSME GASVAGSVVK GAELALEAGC DAVLICNRPD 
LADQLLSKLK VSKTKLDESK RRLNRLMPTS PAVAWDLLQN EPEYQHAKGL LKQFNLI