Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0389 |
Symbol | |
ID | 5053396 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 380133 |
End bp | 382772 |
Gene Length | 2640 bp |
Protein Length | 879 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640470540 |
Product | ribonuclease |
Protein accession | YP_001155173 |
Protein GI | 145588576 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.57215 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACGCA TGTTGTTTAA TGCAACTCAA CAAGAAGAGT TGCGAGTTGC CATCGTTGAT GGTCAAAAAC TCATTGATAT CGATATTGAA GCTGCCGGCC GTGAACAACG CAAAGGCAAC ATTTACAAAG GTGTCATTAC CCGCATTGAA CCCTCTTTAG AGGCATGTTT TGTCAATTAC GGTGAAGAGC GTCACGGCTT CTTACCATTT AAAGAAGTTG CCAGAACGTA TTTCAAAGAA GGTATTGACG TTCGCAACGC CTCCATTAAG GATGCCTTGC GTGAAGGTCA AGAAATCATT GTTCAGGTAG AAAAAGAAGA GCGCGGCCAA AAAGGCGCAG CCCTCACTTC ATTTGTCTCC TTGGCCGGTC GTTACTTGGT ATTAATGCCA AATAACCCAC GCGGAGGCGG TGTTTCCCGT CGCATTGAAG GTGAAGACCG TCAAGAATTA CGCGAAGCAA TGTCCCAATT AGAAGTTCCA GAAGGCATGA GCATCATTGC TCGTACTGCT GGTATTGGTC GCGATGCTAC TGAATTGCAG TGGGATTTAA GTTACCTCAT GCAGTTGTGG AAAGCGATTG ATGAAGCAGC TAAAGGTAAT TCAGCACCAT TGTTGATTTA CCTTGAGTCT AGTTTAGTGA TTCGTGCGAT TCGTGATTAC TTCCAACCTG ATATTGGCGA GATCCTCATC GATACCGATG ACATCTATGA ACAAGCGGCA GCATTTATGT CTGTTGTTAT GCCAGACAAC TTGCCAAGAG TGAAGCGTTA TCACGACGAT GTACCTTTGT TCTCACGCTT CCAAATTGAA CACCAAATTG AAACCGCGTA CTCACGTACG GTGCCACTGC CATCTGGCGG TGCCATCGTC ATTGACCACA CTGAAGCTTT GGTTTCTGTG GACGTCAACT CAGCACGCGC AACCCGTGGC TCTGATATTG AAGAGACCGC AACCCGCACC AACTTAGAAG CTGCCGATGA AATCGCTCGC CAAGCACGTT TACGTGACTT GGGTGGATTG ATCGTGATCG ACTTCATTGA TATGGAATCT AGCAAGGCTC AGAAAGATGT AGAGAATCGT TTGCGCGATG CCCTACGTCA TGACCGTGCT CGCGTTCAAA TGGGCAAGAT CTCCAAATTT GGCCTGATGG AAATGTCACG CCAACGTTTG CGACCAGCCC TTTCTGAAGG TAGTCATGTG ACTTGCCCAC GCTGTAATGG CACTGGCCAC ATTCGTGATA CCGAATCTTC TGCATTGCAA GTTCTGCGCA TCATCCAAGA AGAGGCAATG AAAGAGAATA CTGCAGCGAT TCATACACAG GTACCAGTCG AAGTGGCTGC ATTCCTCTTG AATGAAAAGC GTGCTGAAGT CATTAAGATT GAGACTCGCT TCAAAGTAAA CGTCTTGATG GTTCCGAACA AGCATTTAGA GACACCACAT TACAAGCTAG AGCGCTTGCG TCATGATGAT CCTCGTTTAG ATGATCAAAA AGCAAGCTAC GTGATGGCAG AAGAAGCTGC GCGTGAATTG GAAACTGATA CGACAGTAAG TCGTAAGGAT GCCGAATTAA AAGTGCGTCC AGAAGCAGCC GTTAAAGGCA TCACTCCTGC TCAGCCAGCA CCAATTAGCC AGCCACGTCC AGCACGTACT GAAAAAACTA CTACGGAAAG TTCTGGCGGC CTCTTTGGAT TCATTAAGAA ACTATTTTCT TCCTCCCCTG CGGTAGAAGA AAAACCAGCA CCAAGCAATA CGCGCGGTCG TAACCAAGGT CGCAATGGTG ATCGCAATAA TCGCAACGGT AATCGGGGTC GTCGTGGTGA TCGCAATGAG CGCAATAGTG AACGTGCAGA ACGTCCAGCG GCCGCTGCAG CTGAAGGCCC TGCTAGCACT CCTGCTGAAG GTACCAACAA CCGTACCCGC AATAACCGTA CCCGCAATAA TCAAAACGGT CCTAAGCCAG AGCGCCAAGA AGGCAATCGT AACCAAGCAA ACCCAGCTGC AGTAACTCCT GCAACTGAAG CTGCTCCAGG AACGGATGCT ACCCCAGGAG TTGAAGGTGA AGAGCGTCGT GGTCGTGGTC GCAACCGTCG TGGTCGTGGT CGTGGTCAAC GCGAACGTGG CGAACGTACT GAAGGTGGGA CTGATGCATC GCCCGCAGTA GTTGCTTCGT CTGCTAGTCC ATTTGCAGGC CCTCCTGTAG GTATGGCAGG CGCATCGGCA TCGATGCCTA TTCAGAACAT TACGAATAGC TTTAGCAATG CAAAGCCAGT TGCTGAAAAA CAAGAAAGAG CGCCACGTGC TCCACGTCAA TCTAATCGCT CTGCACCAAG CTCAACTCCA GTAGCAATAC CTGTTGCCGT AGTTGCAGCA AAAGCGACAG TAGAAGTGAT TACAAAGCCC GCGCCTGAGC TTCCAAAAGT TGCCTTCCAG GCACTTGAAG AAACTCCTTT GCATAGCGTG GTGCAGTCTG CTGGCATGAT TTGGGTTGCA ACCGATTCCT CAAAGCATGC AGAAGCGCAA AGTCAGATCA AAGCAGAACC TGTTGCAAGT AACTTAGGCA GAACTCCTAA GCCGGCTGCA GCATTGCCAG ATGGCCCAAT GGTTTTAGTT GAAACCGGCG GCCAAGAAAA AACGGTTTAA
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Protein sequence | MKRMLFNATQ QEELRVAIVD GQKLIDIDIE AAGREQRKGN IYKGVITRIE PSLEACFVNY GEERHGFLPF KEVARTYFKE GIDVRNASIK DALREGQEII VQVEKEERGQ KGAALTSFVS LAGRYLVLMP NNPRGGGVSR RIEGEDRQEL REAMSQLEVP EGMSIIARTA GIGRDATELQ WDLSYLMQLW KAIDEAAKGN SAPLLIYLES SLVIRAIRDY FQPDIGEILI DTDDIYEQAA AFMSVVMPDN LPRVKRYHDD VPLFSRFQIE HQIETAYSRT VPLPSGGAIV IDHTEALVSV DVNSARATRG SDIEETATRT NLEAADEIAR QARLRDLGGL IVIDFIDMES SKAQKDVENR LRDALRHDRA RVQMGKISKF GLMEMSRQRL RPALSEGSHV TCPRCNGTGH IRDTESSALQ VLRIIQEEAM KENTAAIHTQ VPVEVAAFLL NEKRAEVIKI ETRFKVNVLM VPNKHLETPH YKLERLRHDD PRLDDQKASY VMAEEAAREL ETDTTVSRKD AELKVRPEAA VKGITPAQPA PISQPRPART EKTTTESSGG LFGFIKKLFS SSPAVEEKPA PSNTRGRNQG RNGDRNNRNG NRGRRGDRNE RNSERAERPA AAAAEGPAST PAEGTNNRTR NNRTRNNQNG PKPERQEGNR NQANPAAVTP ATEAAPGTDA TPGVEGEERR GRGRNRRGRG RGQRERGERT EGGTDASPAV VASSASPFAG PPVGMAGASA SMPIQNITNS FSNAKPVAEK QERAPRAPRQ SNRSAPSSTP VAIPVAVVAA KATVEVITKP APELPKVAFQ ALEETPLHSV VQSAGMIWVA TDSSKHAEAQ SQIKAEPVAS NLGRTPKPAA ALPDGPMVLV ETGGQEKTV
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