Gene Pnuc_0389 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0389 
Symbol 
ID5053396 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp380133 
End bp382772 
Gene Length2640 bp 
Protein Length879 aa 
Translation table11 
GC content49% 
IMG OID640470540 
Productribonuclease 
Protein accessionYP_001155173 
Protein GI145588576 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.57215 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGCA TGTTGTTTAA TGCAACTCAA CAAGAAGAGT TGCGAGTTGC CATCGTTGAT 
GGTCAAAAAC TCATTGATAT CGATATTGAA GCTGCCGGCC GTGAACAACG CAAAGGCAAC
ATTTACAAAG GTGTCATTAC CCGCATTGAA CCCTCTTTAG AGGCATGTTT TGTCAATTAC
GGTGAAGAGC GTCACGGCTT CTTACCATTT AAAGAAGTTG CCAGAACGTA TTTCAAAGAA
GGTATTGACG TTCGCAACGC CTCCATTAAG GATGCCTTGC GTGAAGGTCA AGAAATCATT
GTTCAGGTAG AAAAAGAAGA GCGCGGCCAA AAAGGCGCAG CCCTCACTTC ATTTGTCTCC
TTGGCCGGTC GTTACTTGGT ATTAATGCCA AATAACCCAC GCGGAGGCGG TGTTTCCCGT
CGCATTGAAG GTGAAGACCG TCAAGAATTA CGCGAAGCAA TGTCCCAATT AGAAGTTCCA
GAAGGCATGA GCATCATTGC TCGTACTGCT GGTATTGGTC GCGATGCTAC TGAATTGCAG
TGGGATTTAA GTTACCTCAT GCAGTTGTGG AAAGCGATTG ATGAAGCAGC TAAAGGTAAT
TCAGCACCAT TGTTGATTTA CCTTGAGTCT AGTTTAGTGA TTCGTGCGAT TCGTGATTAC
TTCCAACCTG ATATTGGCGA GATCCTCATC GATACCGATG ACATCTATGA ACAAGCGGCA
GCATTTATGT CTGTTGTTAT GCCAGACAAC TTGCCAAGAG TGAAGCGTTA TCACGACGAT
GTACCTTTGT TCTCACGCTT CCAAATTGAA CACCAAATTG AAACCGCGTA CTCACGTACG
GTGCCACTGC CATCTGGCGG TGCCATCGTC ATTGACCACA CTGAAGCTTT GGTTTCTGTG
GACGTCAACT CAGCACGCGC AACCCGTGGC TCTGATATTG AAGAGACCGC AACCCGCACC
AACTTAGAAG CTGCCGATGA AATCGCTCGC CAAGCACGTT TACGTGACTT GGGTGGATTG
ATCGTGATCG ACTTCATTGA TATGGAATCT AGCAAGGCTC AGAAAGATGT AGAGAATCGT
TTGCGCGATG CCCTACGTCA TGACCGTGCT CGCGTTCAAA TGGGCAAGAT CTCCAAATTT
GGCCTGATGG AAATGTCACG CCAACGTTTG CGACCAGCCC TTTCTGAAGG TAGTCATGTG
ACTTGCCCAC GCTGTAATGG CACTGGCCAC ATTCGTGATA CCGAATCTTC TGCATTGCAA
GTTCTGCGCA TCATCCAAGA AGAGGCAATG AAAGAGAATA CTGCAGCGAT TCATACACAG
GTACCAGTCG AAGTGGCTGC ATTCCTCTTG AATGAAAAGC GTGCTGAAGT CATTAAGATT
GAGACTCGCT TCAAAGTAAA CGTCTTGATG GTTCCGAACA AGCATTTAGA GACACCACAT
TACAAGCTAG AGCGCTTGCG TCATGATGAT CCTCGTTTAG ATGATCAAAA AGCAAGCTAC
GTGATGGCAG AAGAAGCTGC GCGTGAATTG GAAACTGATA CGACAGTAAG TCGTAAGGAT
GCCGAATTAA AAGTGCGTCC AGAAGCAGCC GTTAAAGGCA TCACTCCTGC TCAGCCAGCA
CCAATTAGCC AGCCACGTCC AGCACGTACT GAAAAAACTA CTACGGAAAG TTCTGGCGGC
CTCTTTGGAT TCATTAAGAA ACTATTTTCT TCCTCCCCTG CGGTAGAAGA AAAACCAGCA
CCAAGCAATA CGCGCGGTCG TAACCAAGGT CGCAATGGTG ATCGCAATAA TCGCAACGGT
AATCGGGGTC GTCGTGGTGA TCGCAATGAG CGCAATAGTG AACGTGCAGA ACGTCCAGCG
GCCGCTGCAG CTGAAGGCCC TGCTAGCACT CCTGCTGAAG GTACCAACAA CCGTACCCGC
AATAACCGTA CCCGCAATAA TCAAAACGGT CCTAAGCCAG AGCGCCAAGA AGGCAATCGT
AACCAAGCAA ACCCAGCTGC AGTAACTCCT GCAACTGAAG CTGCTCCAGG AACGGATGCT
ACCCCAGGAG TTGAAGGTGA AGAGCGTCGT GGTCGTGGTC GCAACCGTCG TGGTCGTGGT
CGTGGTCAAC GCGAACGTGG CGAACGTACT GAAGGTGGGA CTGATGCATC GCCCGCAGTA
GTTGCTTCGT CTGCTAGTCC ATTTGCAGGC CCTCCTGTAG GTATGGCAGG CGCATCGGCA
TCGATGCCTA TTCAGAACAT TACGAATAGC TTTAGCAATG CAAAGCCAGT TGCTGAAAAA
CAAGAAAGAG CGCCACGTGC TCCACGTCAA TCTAATCGCT CTGCACCAAG CTCAACTCCA
GTAGCAATAC CTGTTGCCGT AGTTGCAGCA AAAGCGACAG TAGAAGTGAT TACAAAGCCC
GCGCCTGAGC TTCCAAAAGT TGCCTTCCAG GCACTTGAAG AAACTCCTTT GCATAGCGTG
GTGCAGTCTG CTGGCATGAT TTGGGTTGCA ACCGATTCCT CAAAGCATGC AGAAGCGCAA
AGTCAGATCA AAGCAGAACC TGTTGCAAGT AACTTAGGCA GAACTCCTAA GCCGGCTGCA
GCATTGCCAG ATGGCCCAAT GGTTTTAGTT GAAACCGGCG GCCAAGAAAA AACGGTTTAA
 
Protein sequence
MKRMLFNATQ QEELRVAIVD GQKLIDIDIE AAGREQRKGN IYKGVITRIE PSLEACFVNY 
GEERHGFLPF KEVARTYFKE GIDVRNASIK DALREGQEII VQVEKEERGQ KGAALTSFVS
LAGRYLVLMP NNPRGGGVSR RIEGEDRQEL REAMSQLEVP EGMSIIARTA GIGRDATELQ
WDLSYLMQLW KAIDEAAKGN SAPLLIYLES SLVIRAIRDY FQPDIGEILI DTDDIYEQAA
AFMSVVMPDN LPRVKRYHDD VPLFSRFQIE HQIETAYSRT VPLPSGGAIV IDHTEALVSV
DVNSARATRG SDIEETATRT NLEAADEIAR QARLRDLGGL IVIDFIDMES SKAQKDVENR
LRDALRHDRA RVQMGKISKF GLMEMSRQRL RPALSEGSHV TCPRCNGTGH IRDTESSALQ
VLRIIQEEAM KENTAAIHTQ VPVEVAAFLL NEKRAEVIKI ETRFKVNVLM VPNKHLETPH
YKLERLRHDD PRLDDQKASY VMAEEAAREL ETDTTVSRKD AELKVRPEAA VKGITPAQPA
PISQPRPART EKTTTESSGG LFGFIKKLFS SSPAVEEKPA PSNTRGRNQG RNGDRNNRNG
NRGRRGDRNE RNSERAERPA AAAAEGPAST PAEGTNNRTR NNRTRNNQNG PKPERQEGNR
NQANPAAVTP ATEAAPGTDA TPGVEGEERR GRGRNRRGRG RGQRERGERT EGGTDASPAV
VASSASPFAG PPVGMAGASA SMPIQNITNS FSNAKPVAEK QERAPRAPRQ SNRSAPSSTP
VAIPVAVVAA KATVEVITKP APELPKVAFQ ALEETPLHSV VQSAGMIWVA TDSSKHAEAQ
SQIKAEPVAS NLGRTPKPAA ALPDGPMVLV ETGGQEKTV