| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0364 |
|---|
| Symbol | |
|---|
| ID | 5052415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 359153 |
|---|
| End bp | 360118 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640470515 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_001155148 |
|---|
| Protein GI | 145588551 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAT GTTTATCTAA CAATTTGGGC GACATGCAGA ACACGCAACC GGCTATGCTG
GCTGCTAAAG ATCTGCTGGC TCATGCCATG GCTCCGGTTT ACCGAGTCAT CAATGGCGTC
CTAGTTGTGA CTGTATTTAT GGTGGTAGGT CTTTGGTTAT CGGGCAACGG TACCAATGCA
GGCCCTTTTG ATCTGGCGCG CATTCTGGTT CCAGATGAGG CGCGCCATAT GGTTTGGAGT
AATGGCTTTG GTATGCTCGA TCAATATAAG AGCGCCAATG AGTCAACTGC CACCGCAGCC
CCTGAAACTG ATATTGCCGC AGTAATCTAT AACAAGTCCA GTGTTAAACA GCACACTGTG
GCTCTCTTGA TGCCCTCTGT TGCTCAAGTG CAGGTCAAAT CAATCTCTCA TTTAGCTGAC
CGCATTCCAA CGTCTAAGGT TGACCCTCAG GCCCTGGATA GTAATTTGAT GGGCTCTATT
CAAAATCAAC GTGCAGTAGC TGACTTCTTT GAGAAGAAAT ACAGCCTAGA CCGCGCCAAG
ATTGAGGAAT ATGTTTCCAA TACGATTCTG ATTGCAAAAG AAGTCAATAT TGATCCTGTG
TTGCTATTGG CCGTGATTTC CATTGAGTCA AACTTTAACC CCAATACAAA AAGCCAGGCT
GGTGCAGAAG GCCTTATGCA AGTGATGACT TCAGTGCACA GAGATAAATA CGCTGTATAT
GGTGGCACCA CTCAAGCGGT TAAGCCAGAA GTGAACATTC GTGTGGGCGC CTATATCTTG
AAGTACCTCA TTGCTACAGC CGGTTCTTTG CGTAATGGCC TCAAGTTTTA TGTAGGCGCT
GCTAATGCCG AGGATGATGG GGGCTATGCT GATAAGGTCA TGGCAGAACG TAACCGCTTG
ATTGGCTTGT GCCAGACTCG CTCGGTAAAT CGTTTGACCC TCAACGGTAA GGATCTACGC
TCTTAA
|
|---|
| Protein sequence | MSKCLSNNLG DMQNTQPAML AAKDLLAHAM APVYRVINGV LVVTVFMVVG LWLSGNGTNA
GPFDLARILV PDEARHMVWS NGFGMLDQYK SANESTATAA PETDIAAVIY NKSSVKQHTV
ALLMPSVAQV QVKSISHLAD RIPTSKVDPQ ALDSNLMGSI QNQRAVADFF EKKYSLDRAK
IEEYVSNTIL IAKEVNIDPV LLLAVISIES NFNPNTKSQA GAEGLMQVMT SVHRDKYAVY
GGTTQAVKPE VNIRVGAYIL KYLIATAGSL RNGLKFYVGA ANAEDDGGYA DKVMAERNRL
IGLCQTRSVN RLTLNGKDLR S
|
|---|
| |