| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0353 |
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| Symbol | |
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| ID | 5052615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 347229 |
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| End bp | 348848 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640470504 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001155137 |
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| Protein GI | 145588540 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAAG CAAATACATA CGACTACATC ATCATTGGAG CAGGCAGCGC TGGCTGTATG
TTAGCTAAGC GCTTGACTGA GAATCCCCAG AAAAAGGTCT TGTTGATTGA GGCTGGCAAG
AAAGATAACT ACATCTGGAT TCATATTCCT GTGGGTTATC TGTATTGCAT TGATAACCCA
CGTGCAGACT GGCGCTTTAA GACGGTGGCC GAGCAAGGTC TTAATGGCCG TTCGCTTTTA
TATCCCCGTG GGCGCGTATT AGGTGGATGT TCTTCGATCA ACGGCATGAT CTATATGCGT
GGTCAAGCCG CTGATTATGA AGCTTGGGTG CAAGCCACTG GTGATGAGTC TTGGTCTTGG
GAAAATGCGC TCAAACGATA TAAACAGTTC GAGGATTACC ACGGCGCAGC GAATCAGTGG
CACGGTAAAG GCGGTGAGTG GACAGTATCT AAACAGCGCT TACGCTGGCC CATTATGGAT
AAGTTTAAAG AGGCCGCGGT AGAAGCGGGC ATTCCGGCGA GTGATGACTT TAATCGTGGC
GATAACCTTG GCGTAGGGTA TTTTGATGTG AGTCAACGTG CTGGTTGGAG ATTGAATACT
TCTAAAGCAT TTTTGCGCGA TGCAGCTAAG CGCGGTAACT TAACTGTGCT TACTCAAGCA
GTGGTTTCTA AACTCAAGAT CGATCCAGTA ACTAAAAATT GTCTTGGAGT GGAATACGTT
AAAGACAATG TTGCATCTGA AGCGCTCATC GGCTCTAACG GAGAGGTGTT ATTAAGCGCG
GGCGCGATTG GTAGCGTACA GATTTTGGAG CGCTCTGGTG TTGGCGCTGC CGCTCATTTA
AATTCATTAG GTATTCCGGT GATTGCTGAT TTACCGGGTG TGGGCGAGAA CTTGCAGGAC
CATTTGCAAT TGCGCATGGT CTATAAAGTC AATGGCATTA AGACATTGAA TACCAAGGCC
AACTCTTTAT GGGGCAAGAT GATGATTGGC TTGGAATACC TATTAAAACG CTCAGGTCCA
ATGTCGATGG CGCCATCACA GCTGGGTGCA TTTGCCTTTA GTTCTCCTGA GCAAAAGAGT
GCCAATGTGG AATATCACGT ACAGCCTTTA TCGCTAGAAA AGTTTGGTGA AGATTTGCAT
TCATTCAATG CATTCACTGC AAGCGTTTGC AATGTACGTC CTACATCCCG AGGTAGCGTG
CATATTACCT CTACCGATCC TGAAGCTCCA CCAGCGATTC ACCCCAACTA TTTATCTACT
GAAGAAGATC GTCAGGTTGC TGCAGAATCG TTGCGCTTAA CTCGTAATAT TGTGAAAAGC
CCAGCTCTTC AGCCATTTGA CCCCGAGGAA TATAAACCTG GCGTGCAATA CCAAACAGAT
GCCGAGCTGA TAAAAGCTGC AGGTGACATT GGTACTACGA TTTTTCATCC TGTAGGCACT
TGTAAGATGG GGCGTGCTGA TGATCCGATG GCAGTCTTGG ATTCCCAACT TCGCGTGCGT
GGTATTCATC ATCTGAGGGT AGTCGATGCA TCGGCGATGC CCACGATTAC CTCTGGAAAT
ACAGCAGCTC CAACGATGAT GATTGCAGAA CGTGTCGCGG AGTTATTGGC GGGTGAGTAA
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| Protein sequence | MTQANTYDYI IIGAGSAGCM LAKRLTENPQ KKVLLIEAGK KDNYIWIHIP VGYLYCIDNP
RADWRFKTVA EQGLNGRSLL YPRGRVLGGC SSINGMIYMR GQAADYEAWV QATGDESWSW
ENALKRYKQF EDYHGAANQW HGKGGEWTVS KQRLRWPIMD KFKEAAVEAG IPASDDFNRG
DNLGVGYFDV SQRAGWRLNT SKAFLRDAAK RGNLTVLTQA VVSKLKIDPV TKNCLGVEYV
KDNVASEALI GSNGEVLLSA GAIGSVQILE RSGVGAAAHL NSLGIPVIAD LPGVGENLQD
HLQLRMVYKV NGIKTLNTKA NSLWGKMMIG LEYLLKRSGP MSMAPSQLGA FAFSSPEQKS
ANVEYHVQPL SLEKFGEDLH SFNAFTASVC NVRPTSRGSV HITSTDPEAP PAIHPNYLST
EEDRQVAAES LRLTRNIVKS PALQPFDPEE YKPGVQYQTD AELIKAAGDI GTTIFHPVGT
CKMGRADDPM AVLDSQLRVR GIHHLRVVDA SAMPTITSGN TAAPTMMIAE RVAELLAGE
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