Gene Pnuc_0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0316 
Symbol 
ID5053590 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp308012 
End bp309094 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content38% 
IMG OID640470468 
Productglycosyl transferase family protein 
Protein accessionYP_001155101 
Protein GI145588504 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0472] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.767969 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTAGCT TATTAACTGC CTTTATAGCC TCTTTATTTC TTACGTTTTT GATTATTCAC 
TCTAGACTGA GTCACGAAAA TCATTCTGGG GACATGGCGG ATGCAGGGAT TCAAAAACTC 
CATTTAGTTA CCATTCCAAG GGTTGGGGGA ATAGGCATAT TTTTTGGATT AATTGCTGGA 
TTAACGCTGC ACATCATTAG TACCCCCTAC GAATCAATTA CATGGCAACT ACCCCTAATC 
GCAAGCATCC CATTTGCAAT TGGTTTATCC GAAGATATCT CCAAAAAAGT AGGCGTGAGA 
ATACGCTTAA TGGCAGTTGC AATTTCCGCT TGCTTAGCCA GCTACTTTTT AGATTTAAAA 
ATTTCCAGCA TTGACATAGC GGGAATTGAT TATCTGCTCT CATTTCCTGG CTTAACTATT 
GCCATCACTG TATTTGCCAT TACTGGGCTG ACTAATTCCT ACAATATTAT TGATGGATTA 
AATGGCTTAT CCAGCATGAC TGGAATGCTT GCAGCCTCGT GTTTAGCGTA TTTAGCGTAT 
AGATTAGGTG ACACTACGCT TCTATTTTTG AGTCTAGTTC TATTGGCCGC CATTCTTGGT 
TTTTTCATCC TCAATTATCC AAGAGGTCAT ATTTTTCTAG GGGATGGGGG TGCATACCTC 
ATTGGATTTT GGATTGCAAT ACTGAGCATC TGTTTATCTT ACAAACATAC GCAAGTCTCT 
CCATGGTTTG CATTACTAAT TAACGCATAT CCTGTAACTG AAACTCTTTT CACAATTTAT 
AGAAGATCCT TCTATAAAAA TTCTTCTGCA ATGGATGCAG ATCGACTTCA TCTTCATTCG 
CTTATTTATC GACGCATCTT GCATTCCCAT GCGCTAAAAA CTGAAAATAA ATTCATCGGC 
AAAAACTCAA AAGCGGCACC CTATTTATGG ATCATCAACT TAATAACGTT AGTACCAGCG 
ATATTGTGGT GGGATAAAAC TGGAATGCTA ATCGGGGCTT TTATAATTTA TTTCACAGTC 
TATTTATGGC TGTACAAAAA AATTATCAGC TTTCAAACCC CAAAATGGCT TTTATTTAAG 
TAA
 
Protein sequence
MSSLLTAFIA SLFLTFLIIH SRLSHENHSG DMADAGIQKL HLVTIPRVGG IGIFFGLIAG 
LTLHIISTPY ESITWQLPLI ASIPFAIGLS EDISKKVGVR IRLMAVAISA CLASYFLDLK 
ISSIDIAGID YLLSFPGLTI AITVFAITGL TNSYNIIDGL NGLSSMTGML AASCLAYLAY 
RLGDTTLLFL SLVLLAAILG FFILNYPRGH IFLGDGGAYL IGFWIAILSI CLSYKHTQVS 
PWFALLINAY PVTETLFTIY RRSFYKNSSA MDADRLHLHS LIYRRILHSH ALKTENKFIG 
KNSKAAPYLW IINLITLVPA ILWWDKTGML IGAFIIYFTV YLWLYKKIIS FQTPKWLLFK