Gene Pnuc_0302 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0302 
Symbol 
ID5052064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp292163 
End bp293293 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content45% 
IMG OID640470454 
ProductGDP-mannose 4,6-dehydratase 
Protein accessionYP_001155087 
Protein GI145588490 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1089] GDP-D-mannose dehydratase 
TIGRFAM ID[TIGR01472] GDP-mannose 4,6-dehydratase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.20432 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAGCA AACAAAAAGT CGCCCTCATC ACCGGTATCA CTGGCCAAGA TGGTTCTTAC 
CTAGCTGAGT TTTTATTGGA AAAAGGCTAC ATCGTTCACG GTATTAAGCG TCGCGCCTCT 
TCTTTTAATA CCGAGCGCAT TGATCATCTC TATCAAGATC CGCACGTTAA TCACCCCGAT 
CTTATTCTTC ACTATGGCGA CTTAACCGAT ACCAGTAATT TGGTTCGCAT CATCCAGCAG 
ACTCAACCGG ATGAGATTTA TAACTTAGGC GCTCAGTCTC ATGTAGCCGT TTCATTTGAA 
TCTCCTGAGT ACACTGCTGA TGTGGATGCG ATTGGTCCTT TGCGTATGCT AGAAGCCATC 
CGTATCTTGG GTTTAGAGAA GAAAACCCGT TTTTATCAAG CCTCGACTTC TGAGCTCTAT 
GGTTTGGTGC AAGAAATTCC ACAAAAAGAA ACCACCCCTT TTTATCCGCG TAGTCCATAT 
GCAGTAGCAA AGATGTATGC CTACTGGATT ACCGTGAACT ATCGTGAGGC TTATGGCATT 
TATGCCTGTA ATGGTATTTT GTTTAACCAT GAATCTAAGC GCCGCGGTGA AACTTTTGTT 
ACCCGCAAAG TAACCCGTGG TTTAGCCAAT ATTGCTCAAG GTCTTGAGAA GTGCCTCTTT 
ATGGGAAATA TCGATGCGCT ACGTGACTGG GGTCACGCTA AAGACTATGT TCGTATGCAG 
TGGCTCATGC TCCAACAAGA CAAGCCAGAA GATTATGTCA TTGCTACTGG CGTCCAATTT 
ACTGTGCGTG AATTTATTAC CCGCAGCGCT CAGCAACTTG GTATTACTCT GAAGTTTGAA 
GGCGTTGCTG AAAATGAGAA AGCCATCGTA GCTGCTATCG AAGGCGATAA AGCCCCTGCT 
TTAAAAGTGG GTGATGTGAT TGTGCAAATT GATCCGCGCT ACTACCGCCC AACTGAAGTG 
GAGACACTCC TGGGTGATCC AGCTAAGGCA AAAGCAAAAC TGGGCTGGGT TCCAGAAATT 
ACTTTGGACC AAATGATCGT AGAGATGGTA GCTAATGACT TGGACAAGGC TAAGCAGCAT 
GCGCTATTGC TCAAACATGG TCATAGCGTA GCAGTGGGTA AAGAAAATTA A
 
Protein sequence
MTSKQKVALI TGITGQDGSY LAEFLLEKGY IVHGIKRRAS SFNTERIDHL YQDPHVNHPD 
LILHYGDLTD TSNLVRIIQQ TQPDEIYNLG AQSHVAVSFE SPEYTADVDA IGPLRMLEAI 
RILGLEKKTR FYQASTSELY GLVQEIPQKE TTPFYPRSPY AVAKMYAYWI TVNYREAYGI 
YACNGILFNH ESKRRGETFV TRKVTRGLAN IAQGLEKCLF MGNIDALRDW GHAKDYVRMQ 
WLMLQQDKPE DYVIATGVQF TVREFITRSA QQLGITLKFE GVAENEKAIV AAIEGDKAPA 
LKVGDVIVQI DPRYYRPTEV ETLLGDPAKA KAKLGWVPEI TLDQMIVEMV ANDLDKAKQH 
ALLLKHGHSV AVGKEN