| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0276 |
|---|
| Symbol | |
|---|
| ID | 5053903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 272084 |
|---|
| End bp | 272935 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640470428 |
|---|
| Product | TonB domain-containing protein |
|---|
| Protein accession | YP_001155061 |
|---|
| Protein GI | 145588464 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain
[TIGR02794] TolA protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.131097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGCG CGCAAACTTT CCCATCATCT TCTGCTCCGT TTAAGCGGGG ACGCTTTACC
AAACAAGAAA GTACAAAGCG CGCATTTACA TTTTCACTAA TCGCGCACTT AGGTTTACTC
GCGTTTCTCA TGATTGGTAT TAGCTGGAAC AACAGCACAC CCGCTGGTGT TGAAGTTGAA
CTGTGGGACT CTGCTCCACA AGTGGAGACT CCGCCAGAGC CAGAGCTCAA GACTGCTATT
AAAGAAGAGG CCGCAGATAT TGCTTTAAAG AAAAAACCGG TAGAAAAAGA GCCGCCTAAA
AAGGTAGAGG CAGCTAAAGA GACTCCAAAA CCAGTTAAAC CAGTCCCGCC AAAGGAAAAA
GAAAAACCTA AGCCGGTGGA AAAGGTAAAG CCTGTAGAAA CACCCAAAAA AGCGGAAGCC
CCTAAAAAAG TAGAGGCAGT ATCTCCAGCC GAAACCAAAG CTAATGCTGC GGCAGAAAAA
GTACGCGCTG ATCAATTAGC CCGTTTACGC GCCGCTGCGG GCGCTGAAGG CGGCAAAGGT
GGTACGGTTG GTAGCGGTGT AGGGGGCGGC GGTAATGCCC CTCCTGGCTG GACAGACAAA
GTCATTAAAA AGGTGAAGCC TTTAATCGTC TTTAATCCCG AATCTGTCAG CGGTAATCCA
GCCGCAGTCA TTCAGGTAAG CCTTGCTCCT GATGGGGCTA TTTTGAGCAC CAGTATTTTG
TCTTCCAGCG GTAATGCCAG TTGGGATCGC GCTGTACTAT TGGCGCTGTC ACGTGCTGAA
AGCTTGCCGA AAGATGACAA TGGCAAAATT CCACAGCGCG AAGTCAAATT GACCTTTAAA
CCCAAGGACT AA
|
|---|
| Protein sequence | MNSAQTFPSS SAPFKRGRFT KQESTKRAFT FSLIAHLGLL AFLMIGISWN NSTPAGVEVE
LWDSAPQVET PPEPELKTAI KEEAADIALK KKPVEKEPPK KVEAAKETPK PVKPVPPKEK
EKPKPVEKVK PVETPKKAEA PKKVEAVSPA ETKANAAAEK VRADQLARLR AAAGAEGGKG
GTVGSGVGGG GNAPPGWTDK VIKKVKPLIV FNPESVSGNP AAVIQVSLAP DGAILSTSIL
SSSGNASWDR AVLLALSRAE SLPKDDNGKI PQREVKLTFK PKD
|
|---|
| |