| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0275 |
|---|
| Symbol | tolB |
|---|
| ID | 5053920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 270770 |
|---|
| End bp | 272080 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640470427 |
|---|
| Product | translocation protein TolB |
|---|
| Protein accession | YP_001155060 |
|---|
| Protein GI | 145588463 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00839364 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCAGT CGATGAATAA GATGATCTTG AAGTTACTGA GCTTAAGCGC AATCGTTGCC
GCTCTACTAT GTGGCTTTGC TACACCTGCA TTGGCTCAAA TGAATATTGA GATCACCGGG
GTAGGTCAAT CTCTTTATCC AATTGCGGTA ATGCGTTTCA AAGATGAAAA CAAATTACCT
ACCAACATCA CTGAAATTAT TCGCCAAGAC TTAGCACGTA GTGGTTACTT TAAAAATACT
GAAAATGGCA ACGCCACTGA AAGTGATGAG GGCACACCGA ATTACAAATC TTGGGCTGCA
CGTGGTGCCG ATGCCTTAGT AGTGGGGTCA GTAGTGCAAA CGGGCAATGG CCAATTTGAT
ATTCATTACA AGCTGTTTGA TATTCGTAAA TCTCAAGGCT TGGGGGGCTT AAATCTCAAT
TCCAGCGCGG ATAATCTGCG CGCTGTCGCT CACAAAATCG CTGATGACAT CATCTTCAAA
TTATTGGGTG AGCGTGGCGT GTTCTCTACC CGCCTGTCTT ACGTCATCAA GGATGGTAAG
CGCTATCGCT TAGTCATCTC TGATGCTGAT GGTCAAAATA TTCGCAATGC CATGAATAGT
AGTGAGCCTA TTATTTCTCC ATCCTGGTCA CCTGATGGCA AGAAAGTAGC TTACGTTTCA
TTTGAAGATC GCAAGCCAGT CATCTACGTT CATGAGTTAG CTACTGGTCG TCGCATTTCT
CTTTCCAATC AAAAAGGAAA TAACAGCGCA CCCGCTTGGT CACCAGATGG TAAAAAATTG
GCCGTTTCCT TATCAAAGGA TGGCAATACT CAAATCTACG GCATCAATGC TGATGGCAGT
GGTTTGCATC GCCTCACTCG TGGGAATACC ATTGATACCG AACCCCAATA TTCTGCTGAT
GGTCGTTATA TTTATTTCAC AAGCGATCGT GGTGGAAACC CACAAATCTA TCGCATGAGT
GCTGAAGGTG AGCAAGTAGA AGGTGCTAAA CGAGTTACCT TCAAGCAAGG CTTTGTCACA
TCACCAAGAA TTTCACCAGA TGGCAAATAT TTAGCCTACA TTGCCAATGT CGGAGGCGCT
TATCGTCTCT ACATTCTGAA TTTAGCTACT GGCGACTCTC AAGCGTTAAC TGATGGCACT
AGCGATGAAT CCCCCTCTTT TGCTGCTAAC GGTCGTTACG TTCTTTACTC CACCAAAGTG
GGCGGCAAAA GGGTCTTGGC AGCAGTTTCA GTAGATGGAA ACTCTAAACA AGTGCTCAGC
ATTCCAGGAT CTGACGTCCG TCAGCCTTCC TGGGGTCCAT TTATGGACTA A
|
|---|
| Protein sequence | MLQSMNKMIL KLLSLSAIVA ALLCGFATPA LAQMNIEITG VGQSLYPIAV MRFKDENKLP
TNITEIIRQD LARSGYFKNT ENGNATESDE GTPNYKSWAA RGADALVVGS VVQTGNGQFD
IHYKLFDIRK SQGLGGLNLN SSADNLRAVA HKIADDIIFK LLGERGVFST RLSYVIKDGK
RYRLVISDAD GQNIRNAMNS SEPIISPSWS PDGKKVAYVS FEDRKPVIYV HELATGRRIS
LSNQKGNNSA PAWSPDGKKL AVSLSKDGNT QIYGINADGS GLHRLTRGNT IDTEPQYSAD
GRYIYFTSDR GGNPQIYRMS AEGEQVEGAK RVTFKQGFVT SPRISPDGKY LAYIANVGGA
YRLYILNLAT GDSQALTDGT SDESPSFAAN GRYVLYSTKV GGKRVLAAVS VDGNSKQVLS
IPGSDVRQPS WGPFMD
|
|---|
| |