Gene Pnuc_0275 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0275 
SymboltolB 
ID5053920 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp270770 
End bp272080 
Gene Length1311 bp 
Protein Length436 aa 
Translation table11 
GC content45% 
IMG OID640470427 
Producttranslocation protein TolB 
Protein accessionYP_001155060 
Protein GI145588463 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID[TIGR02800] tol-pal system beta propeller repeat protein TolB 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00839364 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGCAGT CGATGAATAA GATGATCTTG AAGTTACTGA GCTTAAGCGC AATCGTTGCC 
GCTCTACTAT GTGGCTTTGC TACACCTGCA TTGGCTCAAA TGAATATTGA GATCACCGGG
GTAGGTCAAT CTCTTTATCC AATTGCGGTA ATGCGTTTCA AAGATGAAAA CAAATTACCT
ACCAACATCA CTGAAATTAT TCGCCAAGAC TTAGCACGTA GTGGTTACTT TAAAAATACT
GAAAATGGCA ACGCCACTGA AAGTGATGAG GGCACACCGA ATTACAAATC TTGGGCTGCA
CGTGGTGCCG ATGCCTTAGT AGTGGGGTCA GTAGTGCAAA CGGGCAATGG CCAATTTGAT
ATTCATTACA AGCTGTTTGA TATTCGTAAA TCTCAAGGCT TGGGGGGCTT AAATCTCAAT
TCCAGCGCGG ATAATCTGCG CGCTGTCGCT CACAAAATCG CTGATGACAT CATCTTCAAA
TTATTGGGTG AGCGTGGCGT GTTCTCTACC CGCCTGTCTT ACGTCATCAA GGATGGTAAG
CGCTATCGCT TAGTCATCTC TGATGCTGAT GGTCAAAATA TTCGCAATGC CATGAATAGT
AGTGAGCCTA TTATTTCTCC ATCCTGGTCA CCTGATGGCA AGAAAGTAGC TTACGTTTCA
TTTGAAGATC GCAAGCCAGT CATCTACGTT CATGAGTTAG CTACTGGTCG TCGCATTTCT
CTTTCCAATC AAAAAGGAAA TAACAGCGCA CCCGCTTGGT CACCAGATGG TAAAAAATTG
GCCGTTTCCT TATCAAAGGA TGGCAATACT CAAATCTACG GCATCAATGC TGATGGCAGT
GGTTTGCATC GCCTCACTCG TGGGAATACC ATTGATACCG AACCCCAATA TTCTGCTGAT
GGTCGTTATA TTTATTTCAC AAGCGATCGT GGTGGAAACC CACAAATCTA TCGCATGAGT
GCTGAAGGTG AGCAAGTAGA AGGTGCTAAA CGAGTTACCT TCAAGCAAGG CTTTGTCACA
TCACCAAGAA TTTCACCAGA TGGCAAATAT TTAGCCTACA TTGCCAATGT CGGAGGCGCT
TATCGTCTCT ACATTCTGAA TTTAGCTACT GGCGACTCTC AAGCGTTAAC TGATGGCACT
AGCGATGAAT CCCCCTCTTT TGCTGCTAAC GGTCGTTACG TTCTTTACTC CACCAAAGTG
GGCGGCAAAA GGGTCTTGGC AGCAGTTTCA GTAGATGGAA ACTCTAAACA AGTGCTCAGC
ATTCCAGGAT CTGACGTCCG TCAGCCTTCC TGGGGTCCAT TTATGGACTA A
 
Protein sequence
MLQSMNKMIL KLLSLSAIVA ALLCGFATPA LAQMNIEITG VGQSLYPIAV MRFKDENKLP 
TNITEIIRQD LARSGYFKNT ENGNATESDE GTPNYKSWAA RGADALVVGS VVQTGNGQFD
IHYKLFDIRK SQGLGGLNLN SSADNLRAVA HKIADDIIFK LLGERGVFST RLSYVIKDGK
RYRLVISDAD GQNIRNAMNS SEPIISPSWS PDGKKVAYVS FEDRKPVIYV HELATGRRIS
LSNQKGNNSA PAWSPDGKKL AVSLSKDGNT QIYGINADGS GLHRLTRGNT IDTEPQYSAD
GRYIYFTSDR GGNPQIYRMS AEGEQVEGAK RVTFKQGFVT SPRISPDGKY LAYIANVGGA
YRLYILNLAT GDSQALTDGT SDESPSFAAN GRYVLYSTKV GGKRVLAAVS VDGNSKQVLS
IPGSDVRQPS WGPFMD