| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0270 |
|---|
| Symbol | |
|---|
| ID | 5053859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 266870 |
|---|
| End bp | 267985 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640470422 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_001155055 |
|---|
| Protein GI | 145588458 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACAGCG CTGTTGATCA CCAATGGATG GGCGAGGCCT TAGGCGAGGC TCAAAAGGCC
CTCTATTTAG CTAATCCTAA TCCACGAGTG GGTTGTGTCA TCGTTAAAGA TGGGCAAGTC
ATAGGACGCG GGCACACTCA AAGGGTCGGT GGCGCGCATG CAGAAATTCA GGCGATTGCC
GATGCAAAAG CTAACGGAAA AGATATTGCC GGCTCAACCA TCTATGTCAC TCTAGAGCCT
TGTAGCCATA CTGGTCGTAC ACCGCCCTGC GTTAATGCGC TTGTGGTTGC AAGGCCAGCC
AAGGTGATTG TGTCCATGTT GGATCCGAAC CCATTGGTTT CTGGCGGGGG ATTAGCAAGA
CTCACAGATG CAGGCATCGA AGTGCAATGT GGTTTATTGG AGTCTGAAGC ACAAGCAATC
AATCGAGGAT TTATTTCTCG GATGACCAGG GGCTTGCCAT GGGTGCGCAT GAAGATCGCT
GCCAGTCTTG ATGGCAAGAC TGCATTGCCT AATGGTCAAA GTCAGTGGAT TACCGGTCCG
CTTGCGAGAG CAGACGGACA TCATTGGCGC GCACAAGCCT GTGCGATTGT TACAGGCGTT
GGTACAGTTA AAGAGGATGA TCCTAGTCTC AATGTGAGAG AGGTGAGCAC GCATCGTCAA
CCTTGGCGCA TCATCGTCGA CTCCAAATTA GAGACCCCAC CCAATGCCCA GATTTTGAAT
GATCTTCAAG ATTCGGGAGT CATCATTGTT TGCGCCGCTT TGGATGACGT AGATAAAGTA
GCAAAAGCAA AGCAATTTCA GAAGCGTGGC ATTGAGGTCA TTGCTTTTGC AAACCCTCAA
GGCAAAGTTG ATTTGCCCAA ACTATTTACT TATCTTGCTC AAGAACGTGA GATGAACGAA
ATTCATATTG AATCCGGCTT CAAGCTCAAC GGATCGATGC TCAGAGAAGG TTGTGTGGAT
GAGCTCTTAC TCTATTACGC ACCATTTTTC ATGGGTGAGG GTATAGGGAT GGCTAACGTG
CCAACATTGC CTAATTTAAG TACGCGAGAA GACTGGCGCA TTCTCGATCA AAGCATGATC
GGTACTGATC TACGCATTAG ACTAATAAAG AATTAA
|
|---|
| Protein sequence | MYSAVDHQWM GEALGEAQKA LYLANPNPRV GCVIVKDGQV IGRGHTQRVG GAHAEIQAIA
DAKANGKDIA GSTIYVTLEP CSHTGRTPPC VNALVVARPA KVIVSMLDPN PLVSGGGLAR
LTDAGIEVQC GLLESEAQAI NRGFISRMTR GLPWVRMKIA ASLDGKTALP NGQSQWITGP
LARADGHHWR AQACAIVTGV GTVKEDDPSL NVREVSTHRQ PWRIIVDSKL ETPPNAQILN
DLQDSGVIIV CAALDDVDKV AKAKQFQKRG IEVIAFANPQ GKVDLPKLFT YLAQEREMNE
IHIESGFKLN GSMLREGCVD ELLLYYAPFF MGEGIGMANV PTLPNLSTRE DWRILDQSMI
GTDLRIRLIK N
|
|---|
| |