Gene Pnuc_0256 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0256 
Symbol 
ID5053570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp254660 
End bp255214 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content43% 
IMG OID640470408 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001155041 
Protein GI145588444 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.116618 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTTGA AAGTTACACC GACTGCTATT CATGATGTTT TAGTGATTGA GCCGACAGTC 
TTTGGTGATG AGCGTGGCTG GTTTACGGAG TCTTTCAATG CCGTTGACTT TGCAGATGCT 
ACTGGATTAA CCGTCAATTT TGTTCAAGAT AACCACTCAT TTTCTCGTCA ATGGACTTTG 
CGCGGTTTGC ACTATCAGCT CGAGAAAACT CAGGGCAAAT TGGTTCGAGT GGTAGCAGGT 
AGTGTTTTTG ATGTGGCAGT AGATATTCGT AAAGAATCAC CAACATATGG CAAATGGGTT 
GGAATTGAAC TCAGCGCTCA AAATCATAAG CAGTTATGGG TTCCACCTGG ATTGGCTCAT 
GGATTTTTAG TTCTCTCAGA AACAGCAGAG TTTCTTTATA AGACAACGGA TTACTATCAC 
CCTCAAAGCG AAGCTTGCCT TGTCTGGAAT GATCCAACGG TGGCTATTGC ATGGCCTCTA 
CCTGAAGGTG TGAACCCCAA TATGAATGCT AAAGACATGT CTGGTCTTGC ATGGGATGCG 
GCACCAAAGT TTTAA
 
Protein sequence
MKLKVTPTAI HDVLVIEPTV FGDERGWFTE SFNAVDFADA TGLTVNFVQD NHSFSRQWTL 
RGLHYQLEKT QGKLVRVVAG SVFDVAVDIR KESPTYGKWV GIELSAQNHK QLWVPPGLAH 
GFLVLSETAE FLYKTTDYYH PQSEACLVWN DPTVAIAWPL PEGVNPNMNA KDMSGLAWDA 
APKF