Gene Pnuc_0254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0254 
Symbol 
ID5053836 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand+ 
Start bp252748 
End bp253707 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content46% 
IMG OID640470406 
ProductdTDP-4-dehydrorhamnose reductase 
Protein accessionYP_001155039 
Protein GI145588442 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1091] dTDP-4-dehydrorhamnose reductase 
TIGRFAM ID[TIGR01214] dTDP-4-dehydrorhamnose reductase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.445361 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTGC TAGTTTTTGG AAAAGATGGG CAGCTTGGCA AAGCCTTTCA GCAGGTATTT 
TCCGCTCTAA CACCCCCTCA TCCAATCCAT GTAGAGTTCT TGGGTCGAGC TGAGTGTGAT 
TTATGCAACC CAGAAGCTAT TGCCACGACG CTAGATAAAT TCAAACCAAA TATCATCATC 
AACTCCTCTG CATATACGGC GGTGGATAAG GCGGAGACTG AAGTAGATTT AGCTTACGCT 
ATTAATGCTA GAGCTCCAGA ATTGATGGCT GCTTATGCCG CAGAGCATGG CGCAACATTC 
TTGCATTACT CAACTGACTA TGTATTTGAT GGCGAAAAAT ACGGATTTTA TTTAGAGGAT 
GATGTACGCA GTCCTTTGGG CGTCTACGGG AAAAGCAAGG CTGCTGGCGA AGAGGGTATT 
GCAAGAATTT TTGCCAATAG TAAGCTTGGC CAATACGCAA TATTGAGAAC AAGCTGGGTA 
TATGGTGACG GTGGGAATTT CATTCGAACC ATTTTGAGAT TAGCTAAAGA ACGAGAAGAG 
CTGAAAGTCA TCGCAGATCA GTATGGTGTG CCTACTAGTG CCCAGTGGTT GGCTCAAGTG 
AGTTTAGGCC TCACTCTAAA TCAGGATGGC AGTATTAAAC ACTTTCCTTC GGGGATTTAT 
CACGCGGTTC CTGCTGGCGA AACCACTTGG CATGGTCTGG CGACCTTGGC TGTAAGTGCG 
GCTATAAAGG CGGGGGTTGC TCTGAAAGTA CAGCCGGGTT TGATTAAACC AATTCCAGCG 
ACTGAATATC CACTTCCAGC CCCTAGGCCT GCCAATTCAA GAATGTCTAC CGATAAATTG 
CAATCAGCCC TAGGTGGTTC TAGATCTTAT AATGAAGCTC AGCAAAGCCC AGAATTTCCG 
CAGTGGGAAC AGATGGTGCA AGAGTATGTA AGTAGGCTTG CCTCTAGAGG CGAAATTTAA
 
Protein sequence
MKVLVFGKDG QLGKAFQQVF SALTPPHPIH VEFLGRAECD LCNPEAIATT LDKFKPNIII 
NSSAYTAVDK AETEVDLAYA INARAPELMA AYAAEHGATF LHYSTDYVFD GEKYGFYLED 
DVRSPLGVYG KSKAAGEEGI ARIFANSKLG QYAILRTSWV YGDGGNFIRT ILRLAKEREE 
LKVIADQYGV PTSAQWLAQV SLGLTLNQDG SIKHFPSGIY HAVPAGETTW HGLATLAVSA 
AIKAGVALKV QPGLIKPIPA TEYPLPAPRP ANSRMSTDKL QSALGGSRSY NEAQQSPEFP 
QWEQMVQEYV SRLASRGEI