| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0227 |
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| Symbol | |
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| ID | 5052754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 225575 |
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| End bp | 227548 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640470379 |
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| Product | transketolase |
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| Protein accession | YP_001155012 |
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| Protein GI | 145588415 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAATG CCATTCGTGC CTTATCCATG GATGCAGTTC AACAGGCAAA TTCAGGTCAC
CCTGGTATGC CAATGGGAAT GGCAGACATT GCTGTTGGAC TTTGGAACGA GCATTTAAAA
CATAACCCGA CTGATCCGCA TTGGATTGAT CGCGACCGTT TTGTATTGTC CAACGGTCAT
GGTTCGATGT TGTTGTACTC GCTCCTACAT CTCTCTGGTT ATGACTTACC GATTGAAGAG
TTAAAAAACT TCCGGCAATT ACATAGTAAA ACCCCAGGAC ACCCTGAGTA TGGAATTACT
CCTGGCGTTG AAACAACTAC CGGTCCACTC GGGCAAGGAA TTTCAAATGC AGTGGGTATG
GCCCTTGCAG AAAAATTATT AGCAGAAGAA TTTAACCGCC CTGGTATGGA CATCATTGAT
CATTACACCT ACGTATTTTT GGGTGATGGA TGTTTGATGG AGGGTATCAG TCATGAGGTT
TGTTCTTTAG CTGGAACCTT AAAGCTCAAT AAATTAATTG CCTTGTGGGA TGACAACGGC
ATTTCAATCG ATGGCAAAGT AGTTTCATGG TTCAACGAGG ATACGCCGAA GCGCTTTGAA
GCTTATGGTT GGAATGTCAT TCGCGCTGTT GATGGGCATG ATGCTGAAGC AGTGTCAGCA
GCGATTGCAA AAGCCAAAAA GAGTGACAAA CCGACCTTGA TTTGCTGCAA GACAGCGATT
GGCCAAGGCT CGCCTAATAT GGCTGGGAGC GACAAAGTGC ATGGCTCCCC ACTCGGTGCT
GCTGAAATTG CAGCAACTCG TGTTGCCTTA AATTGGCCGT ACGCACCTTT TGAAGTGCCT
AAAGATATTT ACACTGCATG GGATTTTAAA AAGCGTGGAC AAGCAGCAGA GCATGAGTGG
AATAAAGAGT TTCAAAAATA CAAAAATAAA TATCCGGAAT TGGCTTCTGA ATTACAGCGT
CGCATGGAAG GCGAGTTATC AAAAGATTTT TCAGCTACCT TAAATGCCTA TTTAAAAACT
TGCCAATCAA AAGCAGAAAC GATTGCCACA CGTAAGGCAA GTCAAAATGC GATTGAGGCT
TTGGCGCCAG CACTGCCAGA GTTTATGGGC GGATCTGCTG ACTTAACGGG TTCCAATCTA
ACCAACTGGT CAACCTGCAA AGCAGTGCGT GCTGATCAGT GGGGAAATCA TATTAACTAT
GGTGTGCGCG AATTTGGAAT GAGTGCCATC ATGAATGGCA TTGCCTTACA TGGCGGCTAT
ATTCCTTTTG GCGGAACCTT CTTAACTTTC TCAGACTACA GTCGCAATGC CTTGCGCATG
GCTGCCCTGA TGAAATTGCG TAGCATCTTT GTATTTACTC ATGACTCTAT TGGTCTGGGT
GAAGATGGCC CAACCCATCA ATCCGTAGAG CAAGTGGCCA GTTTGCGCTT GATCCCTAAT
TTAATGGTTT GGCGTCCTTG CGACACTACT GAGAGTGCTG TGGCTTGGGG GGCGGCAATT
GAGCGAAAAA ATGGCCCTAG CGCCTTAATT TTTAGTCGTC AGAATTGCCC ATTTGTATCC
CGTACTGCGG CGCAAATTAA AGATATTGCG CGCGGTGGCT ATGTATTGCT TGATCCTCAA
TCTGGAAAAG TAGACGCAGT CATCATTGCT ACCGGTTCTG AAATTGCACT GGCATTGCAA
ACAGCGCAGC AGCTAGAAAA AGAAGGATTG GGTATTCGCA TCGTTTCTAT GCCATCAACC
ACTGTCTTTG ATCAGCAAGA TGCTGCTTAC AAATCAACAG TGTTGCCCGC CAAGATTCCA
CGTATTGCTG TTGAAGCTGG CGTCAGTGAT TTCTGGTGGA AGTATGGATG CGCAGCAGTT
CACGGTGTTG ACACCTTCGG TGAGTCAGCG CCTGCACCAC AACTGTATGA GTATTTTGGT
TTAACGGCCG ATCAGATTTC GAAAACTGTT AAGCAGTGCA TTGCAAATAA ATAA
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| Protein sequence | MANAIRALSM DAVQQANSGH PGMPMGMADI AVGLWNEHLK HNPTDPHWID RDRFVLSNGH
GSMLLYSLLH LSGYDLPIEE LKNFRQLHSK TPGHPEYGIT PGVETTTGPL GQGISNAVGM
ALAEKLLAEE FNRPGMDIID HYTYVFLGDG CLMEGISHEV CSLAGTLKLN KLIALWDDNG
ISIDGKVVSW FNEDTPKRFE AYGWNVIRAV DGHDAEAVSA AIAKAKKSDK PTLICCKTAI
GQGSPNMAGS DKVHGSPLGA AEIAATRVAL NWPYAPFEVP KDIYTAWDFK KRGQAAEHEW
NKEFQKYKNK YPELASELQR RMEGELSKDF SATLNAYLKT CQSKAETIAT RKASQNAIEA
LAPALPEFMG GSADLTGSNL TNWSTCKAVR ADQWGNHINY GVREFGMSAI MNGIALHGGY
IPFGGTFLTF SDYSRNALRM AALMKLRSIF VFTHDSIGLG EDGPTHQSVE QVASLRLIPN
LMVWRPCDTT ESAVAWGAAI ERKNGPSALI FSRQNCPFVS RTAAQIKDIA RGGYVLLDPQ
SGKVDAVIIA TGSEIALALQ TAQQLEKEGL GIRIVSMPST TVFDQQDAAY KSTVLPAKIP
RIAVEAGVSD FWWKYGCAAV HGVDTFGESA PAPQLYEYFG LTADQISKTV KQCIANK
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