Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0217 |
Symbol | |
ID | 5052279 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 215943 |
End bp | 216848 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640470369 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_001155002 |
Protein GI | 145588405 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTCAC ATACTTCTAT TGATTTGCAT ACCGATCCAA GCGTTTATTC TGGCTTGGAT GTCTATGCTG TGGCTGGTAA TCCAATAGCG CATAGCAAGT CACCTGCAAT TCATCAGCGT TTCGCACAGC AAGCGGGGCA GCAAATGTAT TACGGGCGCT TGCAGCCAGA GTTGAACTCT TTTGCCCAAA CTGCCAAATC GTTTTTTTCC GCAGGTGGCA AAGGGATGAA TGTCACCGTT CCATTTAAGT TAGATGCCCA GGCATTGGCT GATCAAGTGA CCGCACGCGC TCAATTGGCC GGCGCTGTAA ATACTCTTTG GATGGTGGAT GGAAAAATCC ATGGCGATAA CACTGATGGT GCAGGTTTCG TACGAGATCT GCTGGCTCAA GGCATAGTGA TTGGAAAATC GCGAATATTG CTTCTTGGTG CTGGCGGTGC AGCGCGTGGA GTGATTGGAC CCTTACTCGA GCAATCACCT AAAAGTGTTG TGATTGCTAA TCGCTCTAGC GCTAAGGCTG ATGAATTAAT TGGCTTATTT GCAAACTTAG CTGCTTCTAA AGAGGTTGCG ATCGAGTCGC GTACTTTAGC CGACCTAGAG GACACTCAAA AAACCCAACA CCCTTTTGAT TTGGTAATTA ATGCCACCGC GGCTGGGTTA TCGGATCAAT CTCCATTGAG TGCTCAGGCA GTCAGTAATG TATTCATGCC AAGTTCATTT GCTTATGACA TGGTCTACGG CAAAACAACG GCCTTTATGC AGCAAGCGCT TCAACGAGGT GCTCGTATTA GTGATGGTTT GGGTATGCTG GTTGAACAGG CTGCCGATGC ATTTTTATTG TGGCGGGGCA CACAGCTTGC TAGCAAAATT GATCCACGCA GCATTTTGGC CGAATTACGT CGTTAA
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Protein sequence | MSSHTSIDLH TDPSVYSGLD VYAVAGNPIA HSKSPAIHQR FAQQAGQQMY YGRLQPELNS FAQTAKSFFS AGGKGMNVTV PFKLDAQALA DQVTARAQLA GAVNTLWMVD GKIHGDNTDG AGFVRDLLAQ GIVIGKSRIL LLGAGGAARG VIGPLLEQSP KSVVIANRSS AKADELIGLF ANLAASKEVA IESRTLADLE DTQKTQHPFD LVINATAAGL SDQSPLSAQA VSNVFMPSSF AYDMVYGKTT AFMQQALQRG ARISDGLGML VEQAADAFLL WRGTQLASKI DPRSILAELR R
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