| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0176 |
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| Symbol | |
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| ID | 5052628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 171507 |
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| End bp | 174272 |
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| Gene Length | 2766 bp |
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| Protein Length | 921 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640470328 |
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| Product | preprotein translocase, SecA subunit |
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| Protein accession | YP_001154961 |
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| Protein GI | 145588364 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
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| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0185588 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTAATCG GTCTTCTTAA AACCCTGGTC GGCAGTCGAA ACGACCGCCT CTTAAAACAG
TATCGCAAAG TAGTTGCTAA GGTTGGCACT TTTGAAGCAA ACCTGCAAAC TTTGGATGAT
GCCGCGCTCG CCGCTAAAAC CGACGAATTC AAGTCTCGCT TAGCTTCTGG CGAGTCTTTG
GATAGCATCG CGCCTGAGGC ATTCGCAGTT GTGCGCGAGG CCAGTGTGCG CGTGATGAAG
ATGCGCCATT TTGATGCTCA GTTGATGGGT GGCTTGGCCT TACATCAAGG CAAGATTGCG
GAGATGGGGA CTGGAGAAGG TAAAACCTTA ACGGCAACCT TACCCGTATA TTTAAATGCA
CTGACCGGCA AAGGTGTGCA CGTTGTTACG GTCAATGATT ATTTGGCGCA ACGTGATGCC
GAGTGGATGT CTACCTTGTA CAACTTCTTG GGTATGAAAG TTGGAGTGAA TCTGTCACAG
ATGGATCACA CCACCAAGAA AGAGGCTTAT GCCGCTGACA TTACCTACGG TACCAATAAT
GAGTTTGGGT TTGATTACCT ACGCGATAAT ATGGTCCAGG ACTTGGAGCA ACGCGTTCAA
CGAGGCTTAG CTTATGCCAT CGTGGATGAG GTGGATTCCA TCTTGATCGA TGAGGCTCGT
ACCCCATTAA TTATTTCCGG CCAAGCCGAT GATCACACTG ATCTCTACAT CAAAATAAAT
GCTCTGCCTT CTCATCTAGA GCTTCAAATT GGTGAAGAGA AGTCTGATGG CACCGGTGTT
GAAAAGCCTG GTGACTATTG GGTGGATGAA AAATCTCAGC AGGTTTACCT TACTGAGCGT
GGCCACGATA AGGCTGAAGA AGTTTTAGTG CAGTTGGGCG CATTAGATGA TGGCGCTTCA
CTATACGCAC CACAAAATAT TACTTTGATG CATCACGTTT ATGCAGCCTT ACGTGCACAT
ACCCTCTATC ACCGTGATCA ACAATATGTC GTTCAAAACG GTGAAGTCAT CATTGTTGAT
GAATTCACAG GCCGTTTGAT GCAAGGACGT CGTTGGTCAG ATGGATTGCA TCAGGCAGTA
GAGGCAAAAG AAGGGGTTGC GATTCAGAAT GAGAATCAGA CTCTAGCGAC GATTACTTTC
CAGAATTATT TCCGCATGTA TGGAAAGCTG GCTGGCATGA CTGGTACCGC CGATACTGAG
GCATATGAGT TCAAGGAAAT TTATAACCTT GAAACCGTAG TTATTCCGCC CAATCGGATT
AGCCAAAGAA AAGACAAGCA AGACCAAATT TACAAGTCTT CACGTGAGCG CTACGATGCC
GTAATTAAGG ATATTGAAGA CTGTTATCAA CGTGGGCAGC CTGTGCTGGT TGGTACTACA
TCGATTGAAA ATTCTGAATT AATTGCTGGT TTGTTGGATA AGCGCAAGCT TCCTCACCAA
GTGTTGAACG CCAAACAGCA TGCTCGCGAA GCTGAAATTA TTGCTCAAGC TGGCCGTCCA
AAAATGATTA CGATCGCTAC CAATATGGCT GGTCGTGGAA CTGACATCGT ACTTGGCGGT
AATGTTGGTA AGCAATCTTC TTTAATTCAA GTCGACGAGG CTCTGAGTGA CTTAGAAAAA
GCTGCAAAGA TTAAGAGCCT GCAGGATGAG TGGCAAAGTA TTCATGATCA AGTGTTGACC
GCTGGTGGTT TACATATCAT CGGCACAGAG CGCCATGAAA GCCGTCGTAT TGATAACCAG
TTAAGAGGCC GCTCTGGTCG TCAGGGTGAC CCAGGTTCAT CACGCTTCTA TCTTTCCTTG
GATGATCCAC TTCTGCGCAT TTTTGCTGGT GATCGCTTGC GCGCAGTGAT GGAACGCTTG
AAGATGCCAG ATGGCGAACC AATCGAAGCA GGCATGGTTA CACGCTCAAT TGAATCTGCC
CAGCGTAAAG TCGAAGGTCG TAACTTTGAT ATTCGCAAAC AATTATTAGA GTATGACGAC
GTAGCAAACG ATCAACGCAA AGAAACCTAT CGCTTAAGAA ATGAAGTGCT TGAAAGTGCT
GATATTGGCG AATTGATTGC CAACTTACGT GAAGATGTAT TGCGTACTAT TTGCTCAATT
TATGTTCCTT TGGAGTCAAT GGAGGAGCAG TGGGATTTGG CTGGACTTGA ACATGCCTTG
GCTAGCGAGT GGGGCCTTAA GGTCGATCTA CAGAAGTGGG TTGAAGGTTC TGATAGTGTT
GATGATGTTG AGATCGTCGA TCGCGTACTT GAGGCGGCCA AAGAATCCTA TGATGCGAAG
GTCGATCTTT CGGGTCGCCA ATCATTTGCT GGCTTTGAGC GCTCAGTACT GCTCTACAGC
GTAGATACTC ATTGGCGCGA ACATTTGGCC GCTTTAGATC ATTTGCGTCA AGGTATTCAT
TTGCGTGGAT ATGCACAAAA GGATCCTAAG CAGGAGTATC GTCGTGAGGC ATTCGAGCTT
TATGGTGAAT TGCTGAACGT GATTAAAAAT GATGTGGTGA AGAACATCAT GACGGTAGAG
ATTCGGAGTG CTAGCGAGTT AGATCAAGCA GCAGAGTCCA TGAATGAAGA CTTGGCAAAA
CTCTCCGATG TTCAATATCA ACATGCTGAT CCAGATATGG AAGTTGCTGG CTCAACTGGT
GATCGTGGTG CGGCTCTTGA TATTCAGCCA GCCCCAGTTC GTTCTGGTCC AAAGATTGGC
CGTAATGATC CTTGCAGTTG TGGCAGCGGT AAGAAATACA AAAATTGCTG CGGAGCATTG
AGTTAA
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| Protein sequence | MVIGLLKTLV GSRNDRLLKQ YRKVVAKVGT FEANLQTLDD AALAAKTDEF KSRLASGESL
DSIAPEAFAV VREASVRVMK MRHFDAQLMG GLALHQGKIA EMGTGEGKTL TATLPVYLNA
LTGKGVHVVT VNDYLAQRDA EWMSTLYNFL GMKVGVNLSQ MDHTTKKEAY AADITYGTNN
EFGFDYLRDN MVQDLEQRVQ RGLAYAIVDE VDSILIDEAR TPLIISGQAD DHTDLYIKIN
ALPSHLELQI GEEKSDGTGV EKPGDYWVDE KSQQVYLTER GHDKAEEVLV QLGALDDGAS
LYAPQNITLM HHVYAALRAH TLYHRDQQYV VQNGEVIIVD EFTGRLMQGR RWSDGLHQAV
EAKEGVAIQN ENQTLATITF QNYFRMYGKL AGMTGTADTE AYEFKEIYNL ETVVIPPNRI
SQRKDKQDQI YKSSRERYDA VIKDIEDCYQ RGQPVLVGTT SIENSELIAG LLDKRKLPHQ
VLNAKQHARE AEIIAQAGRP KMITIATNMA GRGTDIVLGG NVGKQSSLIQ VDEALSDLEK
AAKIKSLQDE WQSIHDQVLT AGGLHIIGTE RHESRRIDNQ LRGRSGRQGD PGSSRFYLSL
DDPLLRIFAG DRLRAVMERL KMPDGEPIEA GMVTRSIESA QRKVEGRNFD IRKQLLEYDD
VANDQRKETY RLRNEVLESA DIGELIANLR EDVLRTICSI YVPLESMEEQ WDLAGLEHAL
ASEWGLKVDL QKWVEGSDSV DDVEIVDRVL EAAKESYDAK VDLSGRQSFA GFERSVLLYS
VDTHWREHLA ALDHLRQGIH LRGYAQKDPK QEYRREAFEL YGELLNVIKN DVVKNIMTVE
IRSASELDQA AESMNEDLAK LSDVQYQHAD PDMEVAGSTG DRGAALDIQP APVRSGPKIG
RNDPCSCGSG KKYKNCCGAL S
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