Gene Pnuc_0165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0165 
Symbol 
ID5052443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp159494 
End bp161116 
Gene Length1623 bp 
Protein Length540 aa 
Translation table11 
GC content45% 
IMG OID640470317 
ProductUDP-N-acetylmuramoylalanine--D-glutamate ligase 
Protein accessionYP_001154950 
Protein GI145588353 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGAACC TAGAAAACAC TTTCGCCAAC CCACTGGCTA TCGCCAATGC AGACTATCAA 
GCCCCCAATC GCTTTTTGAT TATGGGTTTA GGTGAATCCG GTATTGCCAT GGCTAGATGG
TGCCTGCGTA ATGGTGCTGC AGTTCGTTTG GTCGACACAC GTGACCGATC TTCTTTAAGT
GAGCGTCAAT TGGCTTTGCT TGCTGAGCTC GAGTTTGCAG GCCTTAAAGA TATTCACTTT
GGCCCTTTAG GTGATGATCT ACTGGTTGAT ATAGATGTTA TCGGTATCAG TCCTGGTCTA
TCACCCCTTC AAGAGCCTAC CCAATCATTC TTAGTCAATG CTAGAAAATC TCGTATTGAT
ATTTGGAGTG AAATAGAATT TTTTGCCCGG GCAATTGCTG CATTAAGTCG CATGGCACAA
ACAAATGAAT CTAGCTATGC CGCCAAAGTA TTGGCGGTTA CGGGTACCAA TGGAAAAACT
ACAACAACCG CATTAACAGG TCAACTTTGT GAGCGGGCTG GAAAACGAGT AGCTGTCGCA
GGAAATATTA GTCCTGCGGC ACTCGATAAG CTCATGAGTT GTCTAGAAGC TGCAGATCAA
CTAGAAGATA TGCCTGATGT TTGGGTTTTA GAGCTATCCA GCTTCCAATT GGTTTATACA
AGCAGCTTGA ATCCGACAGC CGCTGCTGTT CTGAATATTA CGCAAGACCA TTTGGACTGG
CACGGTGAGA TGTCAGCTTA TGTTGAGGCG AAATCTAAGA TATTTGGTAG CGATACTATT
TGCGTCTTAA ATCGAGATGA TTCCTTGGTG ATGGGATTGT TTTCTGAAGA GCAAAAAGCA
GAAAAATTTA CTGTCACGTT TGGATCCAAT AGGCCGGATG AGCAAGGCGC ATTTGGTATC
GAGCATGATT TACGTGCTGG TGGAATTGAT TGGCTGGTAT GGGCTGAAGT GGATGAAGAT
CTCGAGCCAA AACCAAAGCG CCGTCGTAAA TCAGCTGTGA TTGAGGAGGA TGAGCCTTTA
CGTTTGAAGC GTTTAATTCC TGCAGATGCT TTACGTATTC GTGGACGTCA CAATGCATTA
AATGCACTAG CAGCCCTTGC CTTAGCGCGC GCTGCTAACT TACCGATGAA TGTCCTCTTG
CATGGCTTAC GTGATTACCA TGGTGAGCCG CATCGTGTAC AAAGCATAGC AATAGTAAAT
GATGTTGAAT ATGTGGATGA CAGTAAAGGT ACTAATGTAG GTGCTACTGT CGCGGCAATC
AATGGCTTGG GTAGCAATGA GTCTGGAAAA AGAATTTGGT TGATTGCTGG TGGAGAAGGT
AAGGGACAAG ACTTTAGTCC ATTACGTGAA CCAGCGCTGC GATTCGTAAA AGGTGTTTTT
GTCATAGGTA AAGATGGCGA CAAAATTGTT GAGGCTATGG GGTCAGATAT TCCGTGTACC
AATAGCAAAA CTTTGCAAAT GGCGGTTCAA GCCGCAGCCG CTCAAGCAGT GTCAGGTGAT
TTAGTTTTAT TGTCACCGGC TTGCGCAAGC CTAGATCAGT TCCGCGATTA TGTAGAACGT
GCACAAGTTT TTATCTCGGA AGTTGAAGAG TTGGGAATGC GTTTCGAAGG AGTTCAGGCA
TGA
 
Protein sequence
MLNLENTFAN PLAIANADYQ APNRFLIMGL GESGIAMARW CLRNGAAVRL VDTRDRSSLS 
ERQLALLAEL EFAGLKDIHF GPLGDDLLVD IDVIGISPGL SPLQEPTQSF LVNARKSRID
IWSEIEFFAR AIAALSRMAQ TNESSYAAKV LAVTGTNGKT TTTALTGQLC ERAGKRVAVA
GNISPAALDK LMSCLEAADQ LEDMPDVWVL ELSSFQLVYT SSLNPTAAAV LNITQDHLDW
HGEMSAYVEA KSKIFGSDTI CVLNRDDSLV MGLFSEEQKA EKFTVTFGSN RPDEQGAFGI
EHDLRAGGID WLVWAEVDED LEPKPKRRRK SAVIEEDEPL RLKRLIPADA LRIRGRHNAL
NALAALALAR AANLPMNVLL HGLRDYHGEP HRVQSIAIVN DVEYVDDSKG TNVGATVAAI
NGLGSNESGK RIWLIAGGEG KGQDFSPLRE PALRFVKGVF VIGKDGDKIV EAMGSDIPCT
NSKTLQMAVQ AAAAQAVSGD LVLLSPACAS LDQFRDYVER AQVFISEVEE LGMRFEGVQA