| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0123 |
|---|
| Symbol | |
|---|
| ID | 5053923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 118149 |
|---|
| End bp | 119321 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640470274 |
|---|
| Product | peptidase S1 and S6, chymotrypsin/Hap |
|---|
| Protein accession | YP_001154908 |
|---|
| Protein GI | 145588311 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAATC GACTTTGGTT ACTGTTTGCA CAATCGGTAA CCATTCTTTT AGCTGCTTGG
TTCATTGTGG CAACACTCAA ACCTCAGTGG GTCAGCTCAC CCAATCAAAA TTTATTGGAA
CGTGTGACAC TGAAAGAAGG GCTCTATGAC GGCAGCTCAT TAAGCCCAGG CTCGTATCAC
GAGGCGGTAA AAAAATCGAT GCCCGCAGTG GTGAATATTT TTACCAATAA AAATAGTTCT
AAACCAAAAA CTAAAAAAAG AAATCATTCA TCAGACCCAC TATTTAAATT CTTCTTTGGG
GATGAGCCTC CAGGGGAAGA GCCAAAATCT AGCCTTGGGT CTGGAGTTCT AGTGAGTCCT
GAGGGCGTCA TTCTGACTAA CCATCATGTC ATCAGTGATG CAGATGAAGT TGAAGTCTCG
CTTGCAGATG GTAGAAAATT TTCCGCAAAA CTGATTGGTA GCGATCCAGA AACAGACATC
GCTGTTCTTA AAATTAATGC CCCCTCTTTA CCAACGCCTA TTACTTTTGG AGAGATTGAG
TCGGTTTATG TAGGAGATAT AGTTTTAGCA ATTGGCAATC CTTTTGGCGT AGGGCAAACA
GTCACATCTG GAATAGTGTC CGCCCTTGGA AGAGATCATG TAGGCATTAA TACATTTGAA
AACTTTATTC AAACAGATGC CTCAATTAAT CCTGGAAATT CTGGGGGCGC CTTGGTCGAT
ACTCGCGGCA ATTTAATTGG CATTAACACT GCAATTTATT CAAACAATGG TGGCTCCATG
GGCATTGGCT TTGCTATTCC AGTCAATCTT GCAAAACAAG TGATGGAGTC CATTTTGATA
ACTGGCGGCG TTACTAGGGG ATGGATCGGA GTAGAGCCTC AAAATCTTTC TAAAGAGCTC
TCCGAGTCGC TTGGGCTACC AGCTAATACC GAAGGTGTTC TGTTGTCTGG AATTCTTGAG
GGAGGGCCTG CTGCTCGAGG CGGCGCACAA CCAGGTGATG TTCTCATTAG CGTTAATGAC
AAACCAATTA TGGATGTTCG GCAACTACTG AATCAAATTG CACAAATTGG GCCAGGGAAT
ACAGCTGACC TGAAAGTGTT GCGCAAGAAC AAAACTTTGG ATTTAAAAGT GCAAACTGGA
AAACGTCCCA AACCTACTGC GGTTAATCAA TGA
|
|---|
| Protein sequence | MFNRLWLLFA QSVTILLAAW FIVATLKPQW VSSPNQNLLE RVTLKEGLYD GSSLSPGSYH
EAVKKSMPAV VNIFTNKNSS KPKTKKRNHS SDPLFKFFFG DEPPGEEPKS SLGSGVLVSP
EGVILTNHHV ISDADEVEVS LADGRKFSAK LIGSDPETDI AVLKINAPSL PTPITFGEIE
SVYVGDIVLA IGNPFGVGQT VTSGIVSALG RDHVGINTFE NFIQTDASIN PGNSGGALVD
TRGNLIGINT AIYSNNGGSM GIGFAIPVNL AKQVMESILI TGGVTRGWIG VEPQNLSKEL
SESLGLPANT EGVLLSGILE GGPAARGGAQ PGDVLISVND KPIMDVRQLL NQIAQIGPGN
TADLKVLRKN KTLDLKVQTG KRPKPTAVNQ
|
|---|
| |