| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0094 |
|---|
| Symbol | |
|---|
| ID | 5053369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 88797 |
|---|
| End bp | 93542 |
|---|
| Gene Length | 4746 bp |
|---|
| Protein Length | 1581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640470246 |
|---|
| Product | glutamate synthase (ferredoxin) |
|---|
| Protein accession | YP_001154880 |
|---|
| Protein GI | 145588283 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000146352 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTACAC AAATTCATTC TGATCTTCGC CCAATCGCTC AAGGTCTATA CGACCCACAA
AATGAGCATG ACGCTTGCGG CGTAGGATTC GTTGCACACA TTAAAGGTAA GAAATCTCAC
GAGATCGTTT CTCAGGGCCT GAAGATTTTA GAAAACTTAG ATCACCGGGG AGCGGTTGGC
GCCGATCCTT TAATGGGTGA TGGTGCTGGT ATCTTGATTC AAATTCCGGA TATCTTGTAT
CGCGAAGAAA TGGCGAAGCA AGGCGTTCAC TTACCCCCGC TTGGTGAATA TGGCGTCGGT
ATGATTTTCT TGCCGAAAGA ACATGCATCA CGTTTGGCCT GCGAGCAAGA GTTAGAGCGC
ACAGTACGCT TGGAAGGGCA AGTTGTTTTA GGTTGGAGAG ACGTTCCGGT AGATGTAAAA
CTGCCAATGT CCCCGACAGT ACAAATGACT GAGCCATTCA TCCGCCAAAT CTTTATTGGC
CGTGGCCGTG ACATCATGAC AACTGACGCG CTTGAGCGTA AGTTATATGT CATTCGTAAA
ACAGCAAGCC ATGCCATTCA AGATTTACAT CTGAAGCATG GTAAAGAATA TTTTGTTGCC
TCTATGTCGG CACGCACCAT TGTTTATAAG GGTTTGCTGT TAGCTAACCA AGTGGGCGCG
TACTACCAAG ACTTGCAAGA TCCTCGAACA GTCTCAGCGT TGGCATTAGT GCATCAACGC
TTCTCAACCA ATACCTTCCC AGCTTGGGAG TTGGCTCATC CATACCGCAT GATTGCACAT
AACGGTGAGA TTAATACTGT TAAGGGCAAC GTCAATTGGG TAAATGCTCG CGAAGGTGCG
ATTAGCTCAC CAGTGTTGGG CGATGACCTA CAAAAACTCT GGCCATTGAT CTACCCAGGA
CAGTCTGACA CAGCTTGTTT TGACAACTGC TTAGAGTTGT TAGTGATGTC TGGTTATCCG
CTAGCGCAAG CCATGATGAT GATGATTCCT GAGGCATGGG AACAGCATGC ATTGATGGAC
GACAATCGCC GTGCGTTTTA TGAATATCAC GCGGCAATGA TGGAGCCATG GGATGGCCCT
GCTGCGATGG CATTTACTGA TGGTCGTCAA ATTGGTGCGA CTTTAGATCG CAATGGTTTG
CGTCCAGCTC GTTACTACGT TACCGATGAT GACCTAGTGA TCATGGGATC TGAGGCTGGC
GTATTGCCAA TTCCTGAGAG CAAGATTATT CAAAAATGGC GCTTGCAACC AGGCAAGATG
TTCATGATTG ATATGGAGCA GGGTCGCATT GTTGATGACG TTGAGCTCAA AAATGCGGTG
TCTAAGGCCA AGCCATATAA GAGCTGGATT GATGCGGTTC GCGTCAAGCT AGATGAAGTG
GATGCTAGCA AAGCGGATTT GATTGACGAA AAAATAACGA TTCGTCCGGC GGCTAAATTA
TTGGATCGTC AGCAAGCATT TGGCTATACC CAAGAAGACA TTAAGTACCT CATGGCACCA
ATGGCCATGA ATGGTGAAGA AGCTATTGGT TCGATGGGTA ATGACAGTCC TTTGGCTGTT
CTTTCAAATA AGAACAAACC TTTGTATAAC TACTTCAAGC AGTTATTTGC TCAGGTAACT
AATCCTCCGA TTGACTCCAT TCGCGAAAAC ATGGTGATGT CTCTGGTGTC ATTCATTGGG
CCAAAACCCA ATTTATTAGA TACCAACAAT ATCAACCCGC CAATGCGCTT GGAAGTAAGT
CAGCCTATTT TGGATTTTGA TGACATGACG AAAATTCGTC ACATTGATCA TTACACCAAT
GGGAAGTTCC GCTCTTATGA GTTGGATATT TGTTACCCAG CATCTTGGGG TAAGGCGGGT
ATTGAGGCTC GCCTGGCATC ATTGTGTGCG GAAGCTGCCG ATGCAGTACG CTCTGGTTAC
AACATCTTAA TCGTCAGCGA TCGTCAAGTC GATGAGCAGC ATGTAGCGAT TCCTGCCTTA
TTGGCAACTT CTGCTATTCA TCAGCATTTA GTTCAAAAAG GTCTGCGCAC TAGCGTGGGC
CTCGTTGTCG AAACTGGTAG TGCACGCGAG ACGCATCACT TTGCGCTCTT GGCTGGTTAT
GGTGCTGAAG CAGTTCACCC ATACCTTGCA ATGGAGACAT TGTCCGAGAT GGCTAAAGGC
TTGTCTGGAG ATTTATCAGG TGAGAGGGCA GTTAAGAATT TTGTGAAAGC AGTTGGAAAG
GGTTTGCAAA AAGTGATGTC CAAAATGGGT ATCTCTACTT ACATGTCCTA TACAGGCTCA
CAGATTTTTG AAGCCATTGG CCTAAACCAC GACATTATTG ATCAGTACTT CAAAGGCACT
CCGTCCAATG TTGGCGGTAT TGGTGTGTTC GAGGTAGCTG AAGAAGCTTT ACGTATGCAT
TCTTCAGCAT TCGGTAATGA CCCGGTGCTA ACTAATATGT TAGATGCTGG TGGTGAGTAT
GCATTCCGTA TTCGTGGTGA AAACCATATG TGGACTCCTG ACACAATTGC CAAGCTTCAG
CACTCCACAC GCATTGGCGC TGAGAAGGGT TATCAGACCT ACAAAGAGTA CGCCAACATC
ATCAACGATC AAACTAAGCG TCAAATGACT TTGCGTGGTT TATTTGAATT TAAAGTTGAT
CCAGCTAAAG CCATTCCACT GGATGAAGTC GAATCAGCAA AAGAAATCGT CAAACGTTTT
GCAACGGGTG CGATGTCTTT GGGCTCTATT TCTACTGAAG CTCACGCGAC ATTGGCAGTT
GCCATGAACC GTATTGGTGG TAAGTCCAAT ACTGGTGAGG GCGGTGAAGA TCCAAACCGT
TACGTAAATG AACTCAAAGG CATTCCAATC AAGAGGGGTG AGACCTTAGC TAGCATCTTG
GGTAGTGATG TCGTTGAAGC CAACATCCCA TTATTGGATG GTGATTCATT GCGCTCTAAG
ATCAAGCAAG TGGCTTCTGG CCGTTTTGGC GTAACTACAG AATATTTGCG TTCTGCAGAC
CAAATCCAAA TCAAGATGGC ACAAGGTGCT AAGCCCGGTG AAGGCGGTCA ATTACCTGGC
GGCAAAGTTT CTGATTACAT CGGTAAATTG CGCTTCTCAG TGCCAGGCGT AGGTTTGATT
TCTCCTCCTC CGCACCATGA TATTTATTCA ATCGAAGATA TCGCTCAGTT GATTCATGAC
TTAAAGAACG TCAATCCAAA AGCAGACGTT TCTGTGAAGT TGGTATCTGA AGTGGGCGTG
GGTACGATTG CTGCTGGTGT CGCCAAAGCA AAAGCAGATC ACGTTGTGAT TGCTGGTCAC
GATGGCGGTA CTGGTGCATC ACCACTCTCT TCTATCAAGC ATGCTGGCTC CCCATGGGAG
CTTGGCTTAG CTGAAACACA ACAAACATTG GTTCTTAATG GCTTGCGTAG CCGTATTCGC
GTTCAAGCTG ACGGCCAAAT GAAAACAGGT CGTGATGTTG TAATTGGCGC CTTGTTGGGT
GCAGATGAAT TTGGTTTTGC GACCGCTCCG TTGGTAGTTG AGGGTTGCAT CATGATGCGT
AAGTGTCATT TGAATACTTG CCCTGTAGGC GTTGCAACTC AAGATCCCGA ATTGCGTAAG
AAGTTCTCCG GTAAGCCTGA GCATGTCGTG AATTTCTTCT TCTTTATTGC TGAAGAAGCT
CGCGAGATCA TGGCGCAATT AGGAATTCGT AAGTTTGATG ATCTGATTGG CCGCGTTGAC
TTGTTAGATA CCCGTAAAGG GATAGAGAAC TGGAAAGTAC ATGGTTTGGA CTTCAGCAAG
ATCTTTGCTG CTCCACAAGT AGCTGCAGAT GTTCCTCGTT ACCAAATTCT CACGCAAGAT
CATGGTCTGG CAAGTGCGCT CGACAATATC TTGATTGAGA AGAGTGAGCC GGCTCTTGAA
CGTGGTGAAA AAGTATCCTT TATTGTTCCC GTGAAAAACG TGAATCGTAC TGTCGGTGCA
ATGCTTTCTG GTGAAGTGGC TCAGCGTTAT GGACATGCTG GCCTGCCAGA CGACACTATT
CATATTCAAT TAAACGGTAC TGCTGGACAA AGCTTTGCGG CTTTCTTGGC TCGTGGCATC
ACCTTGGATT TGGTGGGTGA TGGCAACGAC TACGTCGGTA AAGGCCTTTC TGGCGGTCGC
GTCATTGTGC GAGCTCCGCA TGAGTTCCGT GGCGACACTG CTAAGAACAT CATTGTTGGC
AATACAGTGC TTTACGGCGC TATTGCTGGT GAAGCATTCT TTAATGGTGT AGCCGGTGAG
CGTTTTGCAG TTCGTAACTC CGGATCCACA ACAGTCGTTG AAGGTACTGG CGATCATGGT
TGTGAATACA TGACCGGCGG AACTGTCGTG GTTCTGGGTA CGACAGGCCG TAACTTCGCT
GCTGGTATGA GCGGCGGTAT TGCTTATGTT TATGACGAAG ATGGCCTCTT TGATAAGCGT
TGCAATACCA GCATGGCATC TTTAGAAAAA GTATTGCCTT CTGCAGAACA GATTGCCAAG
ATGCCTCAAT CTGAGTGGCA TGCCCCTATT GATGTCAAAG ACGGTGGCGA ACGCTTGACT
GACGAGCAAA TTTTGAAGAG CTTGATTGAG CGTCATTTCC GTTACACCGG TTCGGAGCGT
GCTAAAGCGC TTTTAGCTGA CTGGGAAAAT GCCCGCGGTC GTTTTGTAAA AGTACTTCCA
ACTGAATACA AGCGTGCGCT TGGTGAGTTG TGGGAAAAAG CACAAAAGAA AACGATTGCA
GCGTAA
|
|---|
| Protein sequence | MTTQIHSDLR PIAQGLYDPQ NEHDACGVGF VAHIKGKKSH EIVSQGLKIL ENLDHRGAVG
ADPLMGDGAG ILIQIPDILY REEMAKQGVH LPPLGEYGVG MIFLPKEHAS RLACEQELER
TVRLEGQVVL GWRDVPVDVK LPMSPTVQMT EPFIRQIFIG RGRDIMTTDA LERKLYVIRK
TASHAIQDLH LKHGKEYFVA SMSARTIVYK GLLLANQVGA YYQDLQDPRT VSALALVHQR
FSTNTFPAWE LAHPYRMIAH NGEINTVKGN VNWVNAREGA ISSPVLGDDL QKLWPLIYPG
QSDTACFDNC LELLVMSGYP LAQAMMMMIP EAWEQHALMD DNRRAFYEYH AAMMEPWDGP
AAMAFTDGRQ IGATLDRNGL RPARYYVTDD DLVIMGSEAG VLPIPESKII QKWRLQPGKM
FMIDMEQGRI VDDVELKNAV SKAKPYKSWI DAVRVKLDEV DASKADLIDE KITIRPAAKL
LDRQQAFGYT QEDIKYLMAP MAMNGEEAIG SMGNDSPLAV LSNKNKPLYN YFKQLFAQVT
NPPIDSIREN MVMSLVSFIG PKPNLLDTNN INPPMRLEVS QPILDFDDMT KIRHIDHYTN
GKFRSYELDI CYPASWGKAG IEARLASLCA EAADAVRSGY NILIVSDRQV DEQHVAIPAL
LATSAIHQHL VQKGLRTSVG LVVETGSARE THHFALLAGY GAEAVHPYLA METLSEMAKG
LSGDLSGERA VKNFVKAVGK GLQKVMSKMG ISTYMSYTGS QIFEAIGLNH DIIDQYFKGT
PSNVGGIGVF EVAEEALRMH SSAFGNDPVL TNMLDAGGEY AFRIRGENHM WTPDTIAKLQ
HSTRIGAEKG YQTYKEYANI INDQTKRQMT LRGLFEFKVD PAKAIPLDEV ESAKEIVKRF
ATGAMSLGSI STEAHATLAV AMNRIGGKSN TGEGGEDPNR YVNELKGIPI KRGETLASIL
GSDVVEANIP LLDGDSLRSK IKQVASGRFG VTTEYLRSAD QIQIKMAQGA KPGEGGQLPG
GKVSDYIGKL RFSVPGVGLI SPPPHHDIYS IEDIAQLIHD LKNVNPKADV SVKLVSEVGV
GTIAAGVAKA KADHVVIAGH DGGTGASPLS SIKHAGSPWE LGLAETQQTL VLNGLRSRIR
VQADGQMKTG RDVVIGALLG ADEFGFATAP LVVEGCIMMR KCHLNTCPVG VATQDPELRK
KFSGKPEHVV NFFFFIAEEA REIMAQLGIR KFDDLIGRVD LLDTRKGIEN WKVHGLDFSK
IFAAPQVAAD VPRYQILTQD HGLASALDNI LIEKSEPALE RGEKVSFIVP VKNVNRTVGA
MLSGEVAQRY GHAGLPDDTI HIQLNGTAGQ SFAAFLARGI TLDLVGDGND YVGKGLSGGR
VIVRAPHEFR GDTAKNIIVG NTVLYGAIAG EAFFNGVAGE RFAVRNSGST TVVEGTGDHG
CEYMTGGTVV VLGTTGRNFA AGMSGGIAYV YDEDGLFDKR CNTSMASLEK VLPSAEQIAK
MPQSEWHAPI DVKDGGERLT DEQILKSLIE RHFRYTGSER AKALLADWEN ARGRFVKVLP
TEYKRALGEL WEKAQKKTIA A
|
|---|
| |