| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0092 |
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| Symbol | |
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| ID | 5052101 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 85548 |
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| End bp | 87884 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640470244 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001154878 |
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| Protein GI | 145588281 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000436892 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCTCC CCCCAAAAGA CAAGCCGACG TTTAATCAAC GTCCAATTCG TCAGCCCGAT
AGACGGCCTC GGCATTCCCG AGTAGAACCA GACTCGCCTC AGAAAACATC CGGCAGCCCC
TTGATCAAGG CTTTGCTAAT TATTGGTTTA GCAGCTGCGA TCGTCATGAC CTTATTACTT
GGCTACGCCT TCTTGGTGGC CAAACCCAAT CTTCCTAAAA TCTCGGCCTT AACTGACTAC
AACCCAAAAA CACCTTTGCG TATTTACACC GCAGATAAAG TTTTAATTGG CGAATTTGGA
GAAGAGCGTC GCAAGGTAAT TCCTTTAAGT GAAATTCCAC TCAGTATGCG CAATGCAGTG
CTGGCAATTG AAGATGACCG CTTCTATTCA CATGGTGGCG TCGATTATGT CGGGATCCTT
AGGGCTACTG TGACTAATTT GAGAGGACAT TTGTCCCAAG GGGCTTCAAC TATCACCATG
CAGGTAGCGA GAAATTTCTT CTTAAGTAAT GAGAAGACAT TTAGTCGCAA GATTTATGAA
GTGCTCTTAG CTTGGGAGAT TGAATCTCAA CTGACTAAGG ATAAGATTCT TGAAATCTAT
ATGAATCAGA TTTTCTTGGG GCAAAGAGCA TTCGGTTTTT CAAGCGCGGC ACAAATTTAT
TTTGGTAAAG AATTAAAAGA CATCACGATT GCTGAGTCAG CTATGTTGGC TGGTTTACCT
AAAGCGCCTT CAGCTTACAA CCCGGTCACT AACTTCCGTC GTGCCAAGGT TCGCCAAGAG
TATATTTTGC AACGCATGCG TGATCTTGGC TATATCAATG CCGAAGAGTA TCAAAAAGCA
CTTGTCGAGG AATTGCATAT TCGCGGCCTA GGGAATGAAT TTGCAGTTCG CGCTGACTTT
CCTGCAGAAA TGGTGCGTCA ACTCTTGTTT GCTCAGTATG GCGAAGCCAT CTACTCCCAG
GGGATTGATG TGTACACCAC GATTCTGAAA GCAGATCAGG ATGCTGCCTA TAAGGCGGTC
CGTCGCGGCA TTTTTGAGTA TGACTTGCGC CATGCTTATC GGGGCCCAGA GGGATTTATT
GATCTTCCTG ACGATCCAGT AAAGCGTCAG CGTGCAATCG ATGAAGCTTT ATTGGCCTAC
CCACAATTAG ATGATTTGCA GTCTGGAGTG GTATTGGATG TGAAGCCTAA GGAAATGCAG
GTCATGATTG CAACCGGAGA TACCATTACC CTGAAGGGCG AAGGGATGAA GCTGGCGGCA
GCATCTTTAA CCGATAGCAC CCAACCCAAA AAACGCCTTC GTCCAGGTGC GGTGGTTCGA
TTGCTTTCCG ATGGTGGTGT TTGGAAGTTG GCCCAGCTGC CCCAGGTCGA AGCTGCCTTT
GTCTCGATGA ATGCTGAATC GGGGGCTATT CTGTCTTTAG TGGGCGGATT TGATTTCCGT
CGCAATCAGT TTAATCACGT GACACAAGCC TTGCGCCAAC CTGGATCGTC ATTCAAGCCC
TTTATTTATG CAGCGGCGAT TGAAAAAGGC TTTAGTCCTA GCACCATGGT CAATGACGCC
CCCCTATCAA TTGGCGGCAT GGAAACCGGT AGTCAGGCGT GGGAGCCAAA GAACTATGAC
GGCAAATATG ACGGCATGAT GCGCTTGCGT AATGCATTAG CTAAATCCAA GAACTTGGTA
TCGGTGCGCA TTATTCGTGC CATAGGCCCT TCTTACACTC AAGAATTTAT TCAGCGTTTT
GGTTTTGAGC CAGAAAAACA TCCGCCTTAC CTGACCATGG CTTTGGGGGC AGGTTCAGTA
ACTCCCTTGC AAATGGCGTC TGCCTATAGT GTGTTTGCCA ACGGCGGTTA TCGAGTTGAT
CCGTTCTTAA TTGACAAAAT GGTGGATTCA AAAGGAACGG TTCTATTTGA GGCTAAACCA
GCTAGCGTTG GAAATGGTGC ACCTCGTGTA TTGGACGCCC GTACAGCATT TGTCATGGAT
AGCATGTTGC AAGAGGTTAC CAAGACCGGA ACTGCGGCAA GTGCCCGCGG CAAGTTAGGT
CGGACAGACA TTGCTGGTAA AACTGGAACA ACCAATGAGT CCCATGATGC TTGGTTTGCG
GGCTACAACC CTAAAGTGGT TGCCATTGCC TGGATTGGAT TTGATAAGCC AGCCAGTTTG
GGTGATAAAG AAACGGGCGG AGGTCTAGCC TTACCGATGT GGATTTCATA CATGGGAATT
GCTTTAAAAG ACGTTCCACA AATTTCTCGT GAAGTACCAA GTGGAGTTAC GCAAGTCGAC
GGTGATTGGT TTATTCCAGA ATTTGCACCT AATGGTGGAG TGCGCGAACT GCAATAG
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| Protein sequence | MALPPKDKPT FNQRPIRQPD RRPRHSRVEP DSPQKTSGSP LIKALLIIGL AAAIVMTLLL
GYAFLVAKPN LPKISALTDY NPKTPLRIYT ADKVLIGEFG EERRKVIPLS EIPLSMRNAV
LAIEDDRFYS HGGVDYVGIL RATVTNLRGH LSQGASTITM QVARNFFLSN EKTFSRKIYE
VLLAWEIESQ LTKDKILEIY MNQIFLGQRA FGFSSAAQIY FGKELKDITI AESAMLAGLP
KAPSAYNPVT NFRRAKVRQE YILQRMRDLG YINAEEYQKA LVEELHIRGL GNEFAVRADF
PAEMVRQLLF AQYGEAIYSQ GIDVYTTILK ADQDAAYKAV RRGIFEYDLR HAYRGPEGFI
DLPDDPVKRQ RAIDEALLAY PQLDDLQSGV VLDVKPKEMQ VMIATGDTIT LKGEGMKLAA
ASLTDSTQPK KRLRPGAVVR LLSDGGVWKL AQLPQVEAAF VSMNAESGAI LSLVGGFDFR
RNQFNHVTQA LRQPGSSFKP FIYAAAIEKG FSPSTMVNDA PLSIGGMETG SQAWEPKNYD
GKYDGMMRLR NALAKSKNLV SVRIIRAIGP SYTQEFIQRF GFEPEKHPPY LTMALGAGSV
TPLQMASAYS VFANGGYRVD PFLIDKMVDS KGTVLFEAKP ASVGNGAPRV LDARTAFVMD
SMLQEVTKTG TAASARGKLG RTDIAGKTGT TNESHDAWFA GYNPKVVAIA WIGFDKPASL
GDKETGGGLA LPMWISYMGI ALKDVPQISR EVPSGVTQVD GDWFIPEFAP NGGVRELQ
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