Gene Pnuc_0092 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0092 
Symbol 
ID5052101 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp85548 
End bp87884 
Gene Length2337 bp 
Protein Length778 aa 
Translation table11 
GC content47% 
IMG OID640470244 
Product1A family penicillin-binding protein 
Protein accessionYP_001154878 
Protein GI145588281 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG5009] Membrane carboxypeptidase/penicillin-binding protein 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000436892 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCTCC CCCCAAAAGA CAAGCCGACG TTTAATCAAC GTCCAATTCG TCAGCCCGAT 
AGACGGCCTC GGCATTCCCG AGTAGAACCA GACTCGCCTC AGAAAACATC CGGCAGCCCC
TTGATCAAGG CTTTGCTAAT TATTGGTTTA GCAGCTGCGA TCGTCATGAC CTTATTACTT
GGCTACGCCT TCTTGGTGGC CAAACCCAAT CTTCCTAAAA TCTCGGCCTT AACTGACTAC
AACCCAAAAA CACCTTTGCG TATTTACACC GCAGATAAAG TTTTAATTGG CGAATTTGGA
GAAGAGCGTC GCAAGGTAAT TCCTTTAAGT GAAATTCCAC TCAGTATGCG CAATGCAGTG
CTGGCAATTG AAGATGACCG CTTCTATTCA CATGGTGGCG TCGATTATGT CGGGATCCTT
AGGGCTACTG TGACTAATTT GAGAGGACAT TTGTCCCAAG GGGCTTCAAC TATCACCATG
CAGGTAGCGA GAAATTTCTT CTTAAGTAAT GAGAAGACAT TTAGTCGCAA GATTTATGAA
GTGCTCTTAG CTTGGGAGAT TGAATCTCAA CTGACTAAGG ATAAGATTCT TGAAATCTAT
ATGAATCAGA TTTTCTTGGG GCAAAGAGCA TTCGGTTTTT CAAGCGCGGC ACAAATTTAT
TTTGGTAAAG AATTAAAAGA CATCACGATT GCTGAGTCAG CTATGTTGGC TGGTTTACCT
AAAGCGCCTT CAGCTTACAA CCCGGTCACT AACTTCCGTC GTGCCAAGGT TCGCCAAGAG
TATATTTTGC AACGCATGCG TGATCTTGGC TATATCAATG CCGAAGAGTA TCAAAAAGCA
CTTGTCGAGG AATTGCATAT TCGCGGCCTA GGGAATGAAT TTGCAGTTCG CGCTGACTTT
CCTGCAGAAA TGGTGCGTCA ACTCTTGTTT GCTCAGTATG GCGAAGCCAT CTACTCCCAG
GGGATTGATG TGTACACCAC GATTCTGAAA GCAGATCAGG ATGCTGCCTA TAAGGCGGTC
CGTCGCGGCA TTTTTGAGTA TGACTTGCGC CATGCTTATC GGGGCCCAGA GGGATTTATT
GATCTTCCTG ACGATCCAGT AAAGCGTCAG CGTGCAATCG ATGAAGCTTT ATTGGCCTAC
CCACAATTAG ATGATTTGCA GTCTGGAGTG GTATTGGATG TGAAGCCTAA GGAAATGCAG
GTCATGATTG CAACCGGAGA TACCATTACC CTGAAGGGCG AAGGGATGAA GCTGGCGGCA
GCATCTTTAA CCGATAGCAC CCAACCCAAA AAACGCCTTC GTCCAGGTGC GGTGGTTCGA
TTGCTTTCCG ATGGTGGTGT TTGGAAGTTG GCCCAGCTGC CCCAGGTCGA AGCTGCCTTT
GTCTCGATGA ATGCTGAATC GGGGGCTATT CTGTCTTTAG TGGGCGGATT TGATTTCCGT
CGCAATCAGT TTAATCACGT GACACAAGCC TTGCGCCAAC CTGGATCGTC ATTCAAGCCC
TTTATTTATG CAGCGGCGAT TGAAAAAGGC TTTAGTCCTA GCACCATGGT CAATGACGCC
CCCCTATCAA TTGGCGGCAT GGAAACCGGT AGTCAGGCGT GGGAGCCAAA GAACTATGAC
GGCAAATATG ACGGCATGAT GCGCTTGCGT AATGCATTAG CTAAATCCAA GAACTTGGTA
TCGGTGCGCA TTATTCGTGC CATAGGCCCT TCTTACACTC AAGAATTTAT TCAGCGTTTT
GGTTTTGAGC CAGAAAAACA TCCGCCTTAC CTGACCATGG CTTTGGGGGC AGGTTCAGTA
ACTCCCTTGC AAATGGCGTC TGCCTATAGT GTGTTTGCCA ACGGCGGTTA TCGAGTTGAT
CCGTTCTTAA TTGACAAAAT GGTGGATTCA AAAGGAACGG TTCTATTTGA GGCTAAACCA
GCTAGCGTTG GAAATGGTGC ACCTCGTGTA TTGGACGCCC GTACAGCATT TGTCATGGAT
AGCATGTTGC AAGAGGTTAC CAAGACCGGA ACTGCGGCAA GTGCCCGCGG CAAGTTAGGT
CGGACAGACA TTGCTGGTAA AACTGGAACA ACCAATGAGT CCCATGATGC TTGGTTTGCG
GGCTACAACC CTAAAGTGGT TGCCATTGCC TGGATTGGAT TTGATAAGCC AGCCAGTTTG
GGTGATAAAG AAACGGGCGG AGGTCTAGCC TTACCGATGT GGATTTCATA CATGGGAATT
GCTTTAAAAG ACGTTCCACA AATTTCTCGT GAAGTACCAA GTGGAGTTAC GCAAGTCGAC
GGTGATTGGT TTATTCCAGA ATTTGCACCT AATGGTGGAG TGCGCGAACT GCAATAG
 
Protein sequence
MALPPKDKPT FNQRPIRQPD RRPRHSRVEP DSPQKTSGSP LIKALLIIGL AAAIVMTLLL 
GYAFLVAKPN LPKISALTDY NPKTPLRIYT ADKVLIGEFG EERRKVIPLS EIPLSMRNAV
LAIEDDRFYS HGGVDYVGIL RATVTNLRGH LSQGASTITM QVARNFFLSN EKTFSRKIYE
VLLAWEIESQ LTKDKILEIY MNQIFLGQRA FGFSSAAQIY FGKELKDITI AESAMLAGLP
KAPSAYNPVT NFRRAKVRQE YILQRMRDLG YINAEEYQKA LVEELHIRGL GNEFAVRADF
PAEMVRQLLF AQYGEAIYSQ GIDVYTTILK ADQDAAYKAV RRGIFEYDLR HAYRGPEGFI
DLPDDPVKRQ RAIDEALLAY PQLDDLQSGV VLDVKPKEMQ VMIATGDTIT LKGEGMKLAA
ASLTDSTQPK KRLRPGAVVR LLSDGGVWKL AQLPQVEAAF VSMNAESGAI LSLVGGFDFR
RNQFNHVTQA LRQPGSSFKP FIYAAAIEKG FSPSTMVNDA PLSIGGMETG SQAWEPKNYD
GKYDGMMRLR NALAKSKNLV SVRIIRAIGP SYTQEFIQRF GFEPEKHPPY LTMALGAGSV
TPLQMASAYS VFANGGYRVD PFLIDKMVDS KGTVLFEAKP ASVGNGAPRV LDARTAFVMD
SMLQEVTKTG TAASARGKLG RTDIAGKTGT TNESHDAWFA GYNPKVVAIA WIGFDKPASL
GDKETGGGLA LPMWISYMGI ALKDVPQISR EVPSGVTQVD GDWFIPEFAP NGGVRELQ