Gene Pnuc_0089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_0089 
Symbol 
ID5053448 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp83059 
End bp83544 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content48% 
IMG OID640470241 
Productshikimate kinase 
Protein accessionYP_001154875 
Protein GI145588278 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0703] Shikimate kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.506122 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCGCCG GTAAGTCGAC CGTTGGAAAG GTTCTTGCAA AGAAATTGGG GCGTCGCTTT 
TTGGATGCCG ATCATATTAT CGAGGAACGT TGCGGGGTAA AAATTCCCGT TATCTTCGAA 
ATGGAAGGCG AAGAAGGTTT TCGCAAGCGT GAGGCTCAGG CTATTCGTGA GGCCACCAAC 
GAAAAAAATA TTATTTTAGC GACTGGCGGT GGCGCAGTTC TATTACCGGA AAATCGGCAG 
GCGCTCAGCG AAGGTGGGAC AGTCATTTAC TTGCATGCAA ATCCGCTTGA ACTGTGGCAT 
CGCACTAAGG GGGGTGAAGG TCGCCCCCTC CTTCGCAATG GTGATGCCAA GAAAATTTTA 
GAGAATTTAT ACGCTATTCG CGATCCTCTC TATCGCGAAA TAGCTGATCA CGTTATTGAA 
ACAGGCAAGC CTAGCGTCAA TCAACTGGTC AACACCTTAA TAATGCAGCT TGAACTTTCT 
AACTGA
 
Protein sequence
MGAGKSTVGK VLAKKLGRRF LDADHIIEER CGVKIPVIFE MEGEEGFRKR EAQAIREATN 
EKNIILATGG GAVLLPENRQ ALSEGGTVIY LHANPLELWH RTKGGEGRPL LRNGDAKKIL 
ENLYAIRDPL YREIADHVIE TGKPSVNQLV NTLIMQLELS N