| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0086 |
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| Symbol | |
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| ID | 5054001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 80034 |
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| End bp | 81332 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640470238 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001154872 |
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| Protein GI | 145588275 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAAGTA AAGCAATTCC ACTCCCTTCG CTAACTGGCT TTAGTGAGCG TAACGGCAAT
TGGTACGCCG AGGATATTGC GCTAGCAGAT TTAGCCAGAG AGTTTGGCAC TCCACTTTAT
GTATATAGCA AAAGCGCTTT AAGTAAAGCC TATCAAGCGT ATGACAAAGC ATGCGTTGAT
AAACAAGGTA AACGTCGCGC GAGGATTCAT TACGCAATGA AAGCCAATAG CAACTTAGCA
GTAATTAATT GTTTTAAAGA ACTCGGGGCA GGCTTTGATT TGGTTAGCGG TGGTGAGTTA
GCAAGAGCAT TAGCTATTGG GGCTGATCCA AAAAGTTTAG TGTTCGCTGG CGTTGGAAAA
TCTGCCAAAG AAATTGCTGA AGCCCTGAAG GCTGGAGTCA AATGCATCAA CGTGGAGTCG
ATTGCTGAAC TCCATAAAAT TAATCGCGTT GCCACTGAAC TTGGACTGCG TGCGCCCATT
TCATTACGTG TTAATCCCGA TGTTGATGCG CAGACCCACC CCTATATTTC CACAGGCTTA
AAGGGTAATA AATTTGGTAT TGCCTATCAC GAAGTACTCA AGACTTATCG TGAGGCATCG
CAACTTGCTC AAATTGATGT GGTTGGGATT GATTGTCATA TCGGCTCACA AATTACCACG
ACAGCGCCTT ACTTAGATGC GCTCGATAAA GTATTAGACC TAGTTGCTCA GCTTAAGAAA
GAGGGCATCG TTATTCATCA CCTCGATTTG GGTGGTGGTC TCGGCATTTC TTATAGCGAT
GAAACTCCGC CTGATATCAC TGACTTTACG GATACCTTAT TAAATCGCGT TGCTGAACGG
GGGTTTGGCC ATCTTGACGT TGTGCTAGAA CCAGGCCGTT CCTTAGTAGG AAATGCTGGC
GTGCTTCTCA CCACTGTGGA ATACCTTAAA CCTGGTGCTG AAAAAAACTT TTGCATTGTT
GATGCTGCAA TGACGGAATT GATGCGTCCA GCGCTTTACG AGGCCCACCA CGGCATTGTT
CCAGTACAAG CCAAGCAAGC AAAAGCCTTA ACCTACGACG TTGTGGGGCC TGTTTGTGAA
TCAGGCGATT GGCTGGGAAG AGATCGTCAC CTTGCTGTTG AAGAAGGTGA TCTACTGGCA
ATTCTCTCGG CTGGCGCTTA TGGTTTTGTG ATGGCATCGA ATTACAACAC GCGCCCAAAG
CCAGCGGAGA TCATAGTTGA CGGAAAAAAT GCCTACGTCA TTCGTGCACG TGAAAACACT
TCCGATCTAT TTGCTAGTGA AGCAGTTTTG CCTAAGTAA
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| Protein sequence | MISKAIPLPS LTGFSERNGN WYAEDIALAD LAREFGTPLY VYSKSALSKA YQAYDKACVD
KQGKRRARIH YAMKANSNLA VINCFKELGA GFDLVSGGEL ARALAIGADP KSLVFAGVGK
SAKEIAEALK AGVKCINVES IAELHKINRV ATELGLRAPI SLRVNPDVDA QTHPYISTGL
KGNKFGIAYH EVLKTYREAS QLAQIDVVGI DCHIGSQITT TAPYLDALDK VLDLVAQLKK
EGIVIHHLDL GGGLGISYSD ETPPDITDFT DTLLNRVAER GFGHLDVVLE PGRSLVGNAG
VLLTTVEYLK PGAEKNFCIV DAAMTELMRP ALYEAHHGIV PVQAKQAKAL TYDVVGPVCE
SGDWLGRDRH LAVEEGDLLA ILSAGAYGFV MASNYNTRPK PAEIIVDGKN AYVIRARENT
SDLFASEAVL PK
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