Gene Pnuc_0070 details

Gene Information

• Locus tag: Pnuc_0070
• Symbol: rpsE
• ID: 5051997
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 68933
• End bp: 69451
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640470222
• Product: 30S ribosomal protein S5
• Protein accession: YP_001154856
• Protein GI: 145588259
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.068486
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAAAA TGCAAACTAA GATGCAAAAC GAAGAGCGTG ATGATGGTCT TCGCGAGAAG 
ATGATCGCTG TTAATCGTGT AACTAAAGTG GTTAAGGGTG GTCGTATTCT TGGCTTCGCT 
GCACTCACTG TAGTTGGCGA TGGCGATGGT CGCATCGGCA TGGGTAAAGG CAAATCAAAA 
GAAGTTCCAG TTGCTGTTCA AAAGGCAATG GATGAAGCAC GTCGCAAGAT GATCAAGGTG 
ACATTGCGTA AAGGTACTTT GCAACACACT GTTACTGGTC AGCATGGCGC GTCACGCGTT 
TTGATTTCTC CAGCTAAAGA CGGTACTGGA ATTATTGCTG GCGGCCCAAT GCGAGCAATT 
TTCGACGTAA TGGGCGTAAC TAACGTTGTA GCTAAGTCTC TCGGTTCTAC CAACCCATAC 
AACTTGGTTC GTGCAACGAT TGATGGTTTA AGCAAAATGA GTACTCCTGC TGAGATTGCT 
GCTAAGCGCG GTAAGTCAGT TGAAGAGATT CTCGGCTAA 

 

Protein sequence

MAKMQTKMQN EERDDGLREK MIAVNRVTKV VKGGRILGFA ALTVVGDGDG RIGMGKGKSK 
EVPVAVQKAM DEARRKMIKV TLRKGTLQHT VTGQHGASRV LISPAKDGTG IIAGGPMRAI 
FDVMGVTNVV AKSLGSTNPY NLVRATIDGL SKMSTPAEIA AKRGKSVEEI LG