Gene Pnuc_0068 details

Gene Information

• Locus tag: Pnuc_0068
• Symbol: rplF
• ID: 5052933
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 68014
• End bp: 68547
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640470220
• Product: 50S ribosomal protein L6
• Protein accession: YP_001154854
• Protein GI: 145588257
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.00100116
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCGCG TAGGTAAATC ACCAATTACA GTTCCTAAGG GCGCTGAGAT CAGCATCAAC 
GGTGCTAACG TTACTGTTAA GGGCCCTTTG GGTACTTTGA CACACAATTT GCATCCTTCT 
GTTGGTTTGA AACAAGAAGA TGGCGTCTTG ACAGTTGTTT TAAATAACGA CTCACCAGAA 
GCTGGCGCTC AGTCAGGTAC AGCACGTGCT TTGGTAAACA ACATGGTTGT TGGCGTAACT 
ACTGGCTTTG AGCGCAAGCT CAGCTTGGTA GGCGTTGGTT ACCGTGCTGC TGCTCAAGGT 
GAAACATTGA AATTGCAGTT AGGTTTCTCG CATGACATTA TTTACAACCT GCCAAAGGGT 
GTGAAGGCTG AGACTCCAAC TCAAACTGAA ATCATTATCA AAGGTTCCAA CAAGCAGCAA 
GTTGGCCAGG TTGCAGCTGA AGTTCGCGCA TACCGTTCAC CAGAGCCTTA CAAAGGCAAA 
GGCGTTCGCT ACGTGGATGA GGTTGTGCAC CTGAAAGAAA CTAAGAAGAA GTAA 

 

Protein sequence

MSRVGKSPIT VPKGAEISIN GANVTVKGPL GTLTHNLHPS VGLKQEDGVL TVVLNNDSPE 
AGAQSGTARA LVNNMVVGVT TGFERKLSLV GVGYRAAAQG ETLKLQLGFS HDIIYNLPKG 
VKAETPTQTE IIIKGSNKQQ VGQVAAEVRA YRSPEPYKGK GVRYVDEVVH LKETKKK