Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0056 |
Symbol | rplB |
ID | 5053877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 62628 |
End bp | 63458 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640470208 |
Product | 50S ribosomal protein L2 |
Protein accession | YP_001154842 |
Protein GI | 145588245 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0090] Ribosomal protein L2 |
TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000000310724 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCTTTGA TGAAGACAAA ACCGACCTCA CCAGGTCGTC GTTCAATGGT GAAGGTGGTC AATCCTGACC TCCATAAAGG TAAACCTTTT GCACCATTGC TAGAGCCACA GTTCCAAAAA GCGGGCCGTA ATAATAACGG TCACATCACT ACCCGTCATA AAGGTGGTGG TCATAAGCAT CACTATCGTG TTGTTGACTT CAAACGCAAC GACAAAGATG GTATTCCAGC AAAAGTTGAA CGCTTGGAAT ACGATCCAAA CCGCAGCGCA AACATTGCGT TGATCGTGTT TGCTGATGGT GAGCGTCGTT ATATTCCTGC TGCTAAAGGT ATGACTGTTG GCCAATCTTT AATGAGCGGT TCAGAAGCGC CAATCAAATC TGGAAACAAT TTGCCAATTC GCAATATTCC AGTTGGTAGC ACAATTCACT GCGTAGAAAT CATGCCGGGT AAGGGTGCTC AAGTAGCCCG TTCTGCTGGT GGTTCAGCAG TATTGTTAGC GCGTGAAGGT GTATACGCTC AGGTTCGTTT GCGTTCCGGT GAAGTTCGCC GTGTTCTGAT TGAGTGCCGC GCCACCATTG GTGAAGTTGG TAACGAAGAG CATAGCCTGA GAGTTATCGG TAAAGCAGGT GCAAATCGCT GGCGTGGTAT TCGCCCAACC GTTCGCGGTG TGGCAATGAA CCCAGTAGAT CACCCACACG GTGGTGGTGA AGGTAAAACT GGCGAAGGCC GTGTACCTGT ATCTCCATGG GGCACTCCAA CTAAAGGTTA TCGCACACGT CGCAATAAGC GTACAACTTC GATGATCGTT CAACGTCGTC AAAAACGTTA A
|
Protein sequence | MPLMKTKPTS PGRRSMVKVV NPDLHKGKPF APLLEPQFQK AGRNNNGHIT TRHKGGGHKH HYRVVDFKRN DKDGIPAKVE RLEYDPNRSA NIALIVFADG ERRYIPAAKG MTVGQSLMSG SEAPIKSGNN LPIRNIPVGS TIHCVEIMPG KGAQVARSAG GSAVLLAREG VYAQVRLRSG EVRRVLIECR ATIGEVGNEE HSLRVIGKAG ANRWRGIRPT VRGVAMNPVD HPHGGGEGKT GEGRVPVSPW GTPTKGYRTR RNKRTTSMIV QRRQKR
|
| |