Gene Pnuc_0042 details

Gene Information

• Locus tag: Pnuc_0042
• Symbol: rplK
• ID: 5052717
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 44813
• End bp: 45244
• Gene Length: 432 bp
• Protein Length: 143 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640470194
• Product: 50S ribosomal protein L11
• Protein accession: YP_001154828
• Protein GI: 145588231
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0080] Ribosomal protein L11
• TIGRFAM ID: [TIGR01632] 50S ribosomal protein L11

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000000150349
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAAGA AGATTATTGG CTTTATTAAG CTGCAGATCC CTGCAGGTAA AGCAAATCCA 
TCACCACCGG TAGGTCCAGC ATTGGGTCAA CGCGGTCTTA ATATTATGGA ATTCTGTAAG 
GCGTTCAATG CTCAAACTCA GAGCATGGAG CCAGGCCTTC CCATTCCAGT CGTGATTACA 
GCGTTTGCTG ATAAGAGCTT CACTTTCATC ATGAAGACTC CTCCAGCGAC CATCATGATT 
AAGAAAGCTG CGAAGATCGA AAAAGGATCA CCACGTCCTC ATACCGACAA GGTAGGAAAA 
ATTACACGTG CTCAAGCGGA AGAAATCGCT AAAGCAAAAA TGCCAGATTT GACAGCAGCC 
GATATGGATG CAGCTGTTAG AACAATCGCT GGTAGCGCCC GTTCCATGGG CATCACAGTG 
GAAGGTCTCT AA 

 

Protein sequence

MAKKIIGFIK LQIPAGKANP SPPVGPALGQ RGLNIMEFCK AFNAQTQSME PGLPIPVVIT 
AFADKSFTFI MKTPPATIMI KKAAKIEKGS PRPHTDKVGK ITRAQAEEIA KAKMPDLTAA 
DMDAAVRTIA GSARSMGITV EGL