| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0029 |
|---|
| Symbol | |
|---|
| ID | 5052738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 27590 |
|---|
| End bp | 29719 |
|---|
| Gene Length | 2130 bp |
|---|
| Protein Length | 709 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640470171 |
|---|
| Product | primosomal protein N' |
|---|
| Protein accession | YP_001154815 |
|---|
| Protein GI | 145588218 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
|---|
| TIGRFAM ID | [TIGR00595] primosomal protein N' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTCCC CCATCGTTGT TCAAGTAGTG GTTGATAAGC CGTTGGCCCA GGGCTTTGAT
TACCTATGGG ATTCAAATCA ACTCGGTAAC GACCCTGAGG TCGGGCAGTT AGTAGAAGTG
CCTTTTGGGC GCGCCTCTTT GGTTGGTATT GTAATTAAAG TAAGTGATCA CTCTGATTAT
GAATTAGACA AATTAAAGTC GATAACTCGT GTCGCGCCCC TCCCCCCGTT TGATGCGGCT
AGTCTGCGCT TGGTAAATTT CGCCAGTCAG TATTACATTC ATGCGCTTGG CGAAACTATC
ATTCCTACGA TTCCTCAGAT GTGGAAAAAG CCGGATAACT GGGAAAAGGC GCTAGAAAAA
ATAAGCGCGG CAGAAGAAAA GAAGCGAAAA AAAATTCAGC AAGAGCCAAG CGAAGGATTG
ATTGATGAAG CGCACCTCAA TCAAGGTCAA GCACTAGCTC TTGAAAAGCT GCGCCAATGT
TCTGTGGAGA AAGAATTCAA AACAATTCTT TTGCAAGGGC AAACGGGTAG CGGTAAGACA
GCAGTATTTC TAAATTGGTT AAAAGGAATT TTGGAAGATT CGAGTTCTCA GGTATTGCTT
TTAGTTCCAG AAATTAATTT AACGCCGCAG CTAGAGCGCA GAGTGCGCGC ATATTTTCCA
GATAAAAAAA TGGTTGTGCT GCACAGTGGC GTAAGTGAAA AAAATAGAGG GATTGCTTGG
TACGAAGCAA TGACTGGAAA AGCCCAAATT ATTTTGGGAA CGCGATTGGC CGCATTAACC
CCCTTGCCGA ACTTGCGTGC AATCGTTGTT GATGAGGAGC ATGATCCGTC ATATAAACAA
CAAGACGGCA TTCGATATTC TGCGCGCGAC TTAGCCATTT GGCGGGCCCA CGACTTGAAG
ATACCGGTTT TATTGGCTTC AGCTACACCA TCGCTTGAAA GTTGGATAGC AGCAAAAGCG
GGACGATATG AATATATCCG TCTTGATCAG CGCGCCCAAG GGGCAGCCCT GCCGCAGGTT
CGCTTGATAA ATACGCGCGA CCCACAAAGT CAGTTTAGTC CAGGTGATAT TGGTAGGCCT
ATATCAGCCA GCCTGATTAC CAAAACACTC GCTAATGCAA TTAGTAAAAA TTTAGAGAAC
AAGAAACAAA GCCTGATCCT GATTAATCGT CGCGGCTATG CGCCTATTTT AAGTTGCAAT
GCGTGCACAT GGCTCTCCAA ATGTCAGCAA TGCAGCTCAT ATATGGTGAT GCATAAAGCC
GGTGCCTTAG GCAGAAGACC GGTATTAAGC TGTCATCACT GTGGGCTTGT TAAACCTATT
CCAGAGCATT GCCCAGACTG CGGAAATGCT GATCTAAAGA CTTTGGGAAA AGGCACGCAA
AAAATAGAAG ATGCAATTGA GGAAATGTGG CCAAGCGCTC GCGTTTTGCG GGTCGACACA
GACGCTAGTC GCAAAAGCAA AGGTGCAGAG GAACTCTTTC AGGAGATTCA TGCGGGCAAT
GTCGACATTG TGGTGGGAAC CCAAATGATT GCGAAGGGAC ATGATTACCA AAATATTGGT
TTGGTCGCCG TCCTAGATGC AGATAGTCGA TTATTTTCAC CGGATTTTCG GGCAGCTGAA
CGCCTATTCG CGCAACTCGT TCAAGTTGCA GGACGTGCTG GGCGCTCCAG TAAAGACGAT
CAGGGTGCCG GTGAAATTTA TATCGAAACT CAGTATCCCG AAGCTGCGGT ATTTCAGTAT
TTATTACGCC ATGATGTTGA TGGCTTCTTA GGCTATCTTG CTCATGAGCG CGACGAGGCC
AAATTGCCCC CCTTTTCATA TCAAGGCTTG GTTCATGCCG AAGCCAAAAG CTTGGATAAG
GCAATTCAGT TTTTGGCTGC GCTCAAGGGA CGCTTAAAGT CTCGGGGGTT GATGACGCCA
GGGCTTAAGG TATATGACCC CGTGCCCAGG GCTGTAATGC GTGTGGCTGG CACCGAGCGT
GCTCAGTTGG TATTGGAGGC CGATGATCGC AGGCAGCTAC AAGATGTGCT TGAGGCGGTT
GATCAGGATC TGCGAAATGG ATCGCAAGGA CGAATTAGTA AGGGCGATCG CATCCGCTGG
TTGATTGAGC GTGACCCAAC CTCGATCTAA
|
|---|
| Protein sequence | MPSPIVVQVV VDKPLAQGFD YLWDSNQLGN DPEVGQLVEV PFGRASLVGI VIKVSDHSDY
ELDKLKSITR VAPLPPFDAA SLRLVNFASQ YYIHALGETI IPTIPQMWKK PDNWEKALEK
ISAAEEKKRK KIQQEPSEGL IDEAHLNQGQ ALALEKLRQC SVEKEFKTIL LQGQTGSGKT
AVFLNWLKGI LEDSSSQVLL LVPEINLTPQ LERRVRAYFP DKKMVVLHSG VSEKNRGIAW
YEAMTGKAQI ILGTRLAALT PLPNLRAIVV DEEHDPSYKQ QDGIRYSARD LAIWRAHDLK
IPVLLASATP SLESWIAAKA GRYEYIRLDQ RAQGAALPQV RLINTRDPQS QFSPGDIGRP
ISASLITKTL ANAISKNLEN KKQSLILINR RGYAPILSCN ACTWLSKCQQ CSSYMVMHKA
GALGRRPVLS CHHCGLVKPI PEHCPDCGNA DLKTLGKGTQ KIEDAIEEMW PSARVLRVDT
DASRKSKGAE ELFQEIHAGN VDIVVGTQMI AKGHDYQNIG LVAVLDADSR LFSPDFRAAE
RLFAQLVQVA GRAGRSSKDD QGAGEIYIET QYPEAAVFQY LLRHDVDGFL GYLAHERDEA
KLPPFSYQGL VHAEAKSLDK AIQFLAALKG RLKSRGLMTP GLKVYDPVPR AVMRVAGTER
AQLVLEADDR RQLQDVLEAV DQDLRNGSQG RISKGDRIRW LIERDPTSI
|
|---|
| |