| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_0012 |
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| Symbol | |
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| ID | 5052213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 11742 |
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| End bp | 12512 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640470154 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001154798 |
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| Protein GI | 145588201 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.777235 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATCA ATCAGCTGTT TCGATTGGAT AATAAAACCG CTTTTATAAC GGGTGCGTCT
AGCGGCATTG GCAAACACTG CGCCATTCTA TTGGCTCAGG CAGGCGCAAA GGTAGCTCTT
GCTTCCCGGC GGGTTGATCA ACTGCAATCC GTGGTTGATG AAATCACTGG ACTTGGTGGA
CAAGCCAAAG CTTTTGAGTT GGATGTAACA AATAACAAAA GTGTTGTTCG GTGTTTTGAT
GAGCTAACAC ATTGGGACAT GCCAACAATC ATCATTAACA ATGCTGGCAT GAGCGTCAAC
CGCAAACTTC TTGATCAAAC TGAGGAAGAT TGGGATCGAG TAATAGATAC CAATCTAAAA
GGGTCTTGGC TCGTTGCAAC CGAGGCAGCT AGAAGACTTG CCGCCACCAA CACCCCTGGA
AATATTGTGA ATGTCGCTTC CATTTTGGGT GAGCGAATTA TTGGTGGTGT TGCCCCTTAT
GTCATTTCCA AAGCAGGGGT TATTCAAAGT ACCAAGGTGA TGGCTTTAGA GTTGGCGCGG
CAAGAGATTC GTGTAAATGC ACTTTTACCC GGCTATGTTA TTACCGATCT CAATCGAGAT
TTTTTATTAA GTGAGGCAGG ACAGAAAATT CTGACCCGCA TTCCTACGCG GCGTTTTAAT
AACCTAGAGG ATCTCAATGG TCCACTTTTG TTGTTGGCCT CAGATGCAAG TAAAGCTATG
ACAGGCACGA CTCTCGTGGT TGACAGCGGG CACCTCATCA GCGGGCTTTA A
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| Protein sequence | MDINQLFRLD NKTAFITGAS SGIGKHCAIL LAQAGAKVAL ASRRVDQLQS VVDEITGLGG
QAKAFELDVT NNKSVVRCFD ELTHWDMPTI IINNAGMSVN RKLLDQTEED WDRVIDTNLK
GSWLVATEAA RRLAATNTPG NIVNVASILG ERIIGGVAPY VISKAGVIQS TKVMALELAR
QEIRVNALLP GYVITDLNRD FLLSEAGQKI LTRIPTRRFN NLEDLNGPLL LLASDASKAM
TGTTLVVDSG HLISGL
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