Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0006 |
Symbol | |
ID | 5053041 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 6181 |
End bp | 6942 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640470148 |
Product | ABC transporter related |
Protein accession | YP_001154792 |
Protein GI | 145588195 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.362312 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCAAGAAA TAATATTAGA GACAATTGGG TTGGGAAAAT CCTTTAAAGG GTTTTCTGCA GTTACGGACG TGAACCTCAA GGTCACTCGC GGTACCATTC ACGCCCTAAT TGGTCCCAAT GGCGCAGGAA AAACAACATG CTTCAACTTG CTTACTAAGT TCTTGGAGCC AACCAGTGGC CAAATCTTAT TTAATGGTTT TGACATTACA AAAGAAGCGC CAGCCGAAAT AGCCCGCCGT GGAATTATTC GCTCTTTTCA GATTTCAGCT GTTTTCCCAC ACTTAACAGT TTTAGAGAAT GTTCGTGTTG CACTGCAGCG AGGATTGGGA ACAGAGTTCT TTTTTTGGAA ATCCGGCTCT TCTTTAAATG TTTTGAATGA CCGCGCTTTA GAGTTGTTGC ATGAGGTTGG TTTGGAGGAG TTTGCCCATA AAGAAACCCT CAACTTAGCT TATGGACGCA AAAGGGCCCT TGAAATTGCA ACTACCTTGG CCATGGAGCC AGAGTTGATG CTCTTAGATG AGCCTACCCA AGGTATGGGA CATGAGGACG TTGACCACGT TACACGGTTA ATCGATCGCG TTGCCAAGGG GAGAACTATC CTCATGGTTG AACACAATAT GAAGGTGATT GCTTCTATCG CCAATAAAAT TACAGTTTTA CAGCGAGGAT CTGTCTTGGC TGAAGGCTCG TACCAAGAGG TGTCTAGCAA TCCTTTGGTG GTTGAGGCAT ATATGGGCAG CCACGGGGGT GATGCCCTAT GA
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Protein sequence | MQEIILETIG LGKSFKGFSA VTDVNLKVTR GTIHALIGPN GAGKTTCFNL LTKFLEPTSG QILFNGFDIT KEAPAEIARR GIIRSFQISA VFPHLTVLEN VRVALQRGLG TEFFFWKSGS SLNVLNDRAL ELLHEVGLEE FAHKETLNLA YGRKRALEIA TTLAMEPELM LLDEPTQGMG HEDVDHVTRL IDRVAKGRTI LMVEHNMKVI ASIANKITVL QRGSVLAEGS YQEVSSNPLV VEAYMGSHGG DAL
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