| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_2358 |
|---|
| Symbol | sdhA |
|---|
| ID | 5055814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum arsenaticum DSM 13514 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009376 |
|---|
| Strand | + |
|---|
| Start bp | 2109853 |
|---|
| End bp | 2111598 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640469909 |
|---|
| Product | succinate dehydrogenase flavoprotein subunit |
|---|
| Protein accession | YP_001154553 |
|---|
| Protein GI | 145592551 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.479481 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATTT TGAAGTACGA CTTACTAATC ATTGGATCCG GAATAGCGGG TTTGCGTGCG
GCCACAGCAG CCGCATGGGC CAGCGGGGGG AAAATATCCA TTGCAATTTT GTCCAAAATC
CAGGCGATGC GTAGTCACAG CCTCTCGGCG GAGGGCGGTA TGTCGGCTGT ACTTTACCCA
GAAAAGACAA ACGATTCTTT AGAGTTGCAC GCCTATGACA CAGTTAAGGG TAGTGATTTC
TTGGCAGATC AAGACGCCGT GCAGGTTCTG GTAGAATACG CGCCGAAAGA GGTTAGATAT
CTAGAAAGAA TTGGTGTCCC CTGGACGAGA GAGCCTGATG GGAGAATTGC ACAGAGGCCC
TTCGGAGGGA TGTCTATCCC TAGGACTACT TTCGCAGCCG ACAAGACAGG CTTCTTTATT
ATGTCAACGC TTTTCTCTGA GACCCGGAGA TTTGACAATA TACATGTCTA CCACGAGCAC
TTTGTGACGA AGTTTATTAT TGAAAATGGC GAGTTTAGGG GGGTCACCGC CTACGATCTA
AAGAGGGGGG AGTTTAAATT CTTCTACGCC AAGGCTGGCA TAATAGCGAC GGGCGGAGCC
GGAAGGCTGT ACCGCTTCAC CACCACGGCG CACTCCACTA CTGGAGAGAC ACTGGCCTAC
GCCCTGAGAG AGGGAATAGC CATTAAGGAC ATGGAGTTCG TTCAGTGGCA CCCCACGGCA
CTTGTGCCCA GTGGTATTTT AGTCAGCGAG GCGGCAAGGG GGGAGGGCGG CTATCTAATA
AACAAAGACG GCGAGCGGTT TATGAAAAAA TATGCGCCAC AGAAAATGGA GCTGGCCCCA
AGGGACATTG TGTCCCGTGC TATCCTCACC GAGTGCATGG AGGGGAGGGG ATTTCAGCAC
GAATCTGGAA TGTGCTACGT GGGGCTAGAT CTTAGACACT TGGGAGAGGA GAAGATTAAC
AAAAGGATTC CGTTCATACG GGAGCTGGCA CATAAATACG CCGGCATAGA CGCCTTGTCT
GAGCCCATAC CTGTGAGGCC GGCGGTCCAC TACACAATGG GTGGGATACA CACGGATACT
TGGGGACGTG TGCTCACCGC AGACGGCAAA TGGGTGAGGG GGCTGTGGGC GGCCGGCGAG
GCGGCGGCTG TCAGTGTCCA CGGAGCGAAT AGGCTTGGTT CCAACTCTCT GAGCGAGTGT
TCTGTGTGGG GGAGACTCAC CGGTGAACAA GCCGCTAAGT ACGTCCTAGA GCAACCGCCG
CTCTCCTCGC CGGATGGTAA AGTTGTGGAG ATAGCCAAGA AGGAGGAGGC CCGGGTGTTT
GACAAGCTCC TACACAAGGA GGTGAACGCG CCTATGCCCT ACGAAGTTAA AAGACAGCTA
AACGACATAA TGGAGGAGCA CTTTGGACCT TTTAGACACG GCTCGGCAAT GGCAGAAGGA
CTTGCCAAAC TTAAGAAGCT AAGAGACATC TCCTCCTACC GGGTTGTAGA CAGTAGTAAG
GTCTACAATC AGAATTTAAA AGATGCACTA GAGGTGGATG GCATGATCAA CTTGGCTCTG
GTAATAGGCG TAGGCGCATA TGCCCGCACG GAGTCTAGGG GCGCCCATTA TAGGCTTGAC
TATCCAAAGA GAGACGACGT CAACTGGCTT AGACATACTG TGGCGTATCT ATACGGCGGG
GAGATAAAGC TGACGTACAC TCCAGTAACT ATTACCAAGT GGCAACCAGA AGAGAGAAAG
TATTGA
|
|---|
| Protein sequence | MEILKYDLLI IGSGIAGLRA ATAAAWASGG KISIAILSKI QAMRSHSLSA EGGMSAVLYP
EKTNDSLELH AYDTVKGSDF LADQDAVQVL VEYAPKEVRY LERIGVPWTR EPDGRIAQRP
FGGMSIPRTT FAADKTGFFI MSTLFSETRR FDNIHVYHEH FVTKFIIENG EFRGVTAYDL
KRGEFKFFYA KAGIIATGGA GRLYRFTTTA HSTTGETLAY ALREGIAIKD MEFVQWHPTA
LVPSGILVSE AARGEGGYLI NKDGERFMKK YAPQKMELAP RDIVSRAILT ECMEGRGFQH
ESGMCYVGLD LRHLGEEKIN KRIPFIRELA HKYAGIDALS EPIPVRPAVH YTMGGIHTDT
WGRVLTADGK WVRGLWAAGE AAAVSVHGAN RLGSNSLSEC SVWGRLTGEQ AAKYVLEQPP
LSSPDGKVVE IAKKEEARVF DKLLHKEVNA PMPYEVKRQL NDIMEEHFGP FRHGSAMAEG
LAKLKKLRDI SSYRVVDSSK VYNQNLKDAL EVDGMINLAL VIGVGAYART ESRGAHYRLD
YPKRDDVNWL RHTVAYLYGG EIKLTYTPVT ITKWQPEERK Y
|
|---|
| |