Gene Pars_2245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPars_2245 
SymbolhemC 
ID5055557 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum arsenaticum DSM 13514 
KingdomArchaea 
Replicon accessionNC_009376 
Strand
Start bp2012207 
End bp2013100 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content56% 
IMG OID640469798 
Productporphobilinogen deaminase 
Protein accessionYP_001154443 
Protein GI145592441 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0181] Porphobilinogen deaminase 
TIGRFAM ID[TIGR00212] porphobilinogen deaminase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.53648 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.202815 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACTAG TAGTGGCAAC TAGGGGGAGC AAGCTGAGCA TGCTCCAAAC AGAGGAGTTG 
CTCGCGCAGA TAAAGGCCGT TGAGCCTAGC ATTGAGTTCG AGATAAAGAT CGTGAAGACG
ACTGGAGATG AGGTACAAGA CAAGCCGCTT TATCAGATAG GGGTAAAGGG CATTTTCGAG
AAGGAGGTAA ACCTGGCGGT GCTGAGGGGC GAGGCGGATG TCGCTGTGCA TTCGCTTAAG
GATCTCCCGT CGGAGCTTTC GCCGGGGCTT GTCCTCGCCG GGTTTTCTAA AAGGGCGCCG
CCCTTCGATG CGGTAGTAAG CACGGCTGGG TACGTCCTCG AAACGTTGCC CCGGGGCGCT
TTGGTCGGCA CCTCCAGCGT TAGGAGAGCT GAGTTCGTGA AGGCTATCAG GCCCGATGTG
AGGGTTGAGC CGCTGAGGGG GAACGTCGAT ACTAGGATCA ACAAAATACT CCAGGGTAAG
TACGATGCTG CTATTATGGC AGTCGCCGGC ATATATAGGC TATACGGAGC CTCGCCCCCC
ATAAAGCTGG CAGTCTTGAG GCCTGAGGTC TTGCCCCCAC CGCCAGGCCA GGGCATCGTC
GCGGCCGTTG TGAGGGAGGC CGATAGTTGG TTAATTGATT TGTTAAAGAA GGCGAGCGAC
CCCAAAGCCT CGTTGGAAGC AATTGCTGAG AGGGAATTCC TCAAGGCCGT GGGCGCCGGT
TGTCATGTGG CTATCGGAGG CGTGGCATTC GCTAGAAATG ACACTGTGGA ATTCATAGCG
GGATACGCCT CCGGCGGCAG GAAGTACATA GTCAGGGTTG TAGGCGACGA CCCTGTTGAG
GTGGGGCGGA GGGCCGCGGA GGAAATCCGT AAGTTTAAAG ACGGAGACGT TTAG
 
Protein sequence
MRLVVATRGS KLSMLQTEEL LAQIKAVEPS IEFEIKIVKT TGDEVQDKPL YQIGVKGIFE 
KEVNLAVLRG EADVAVHSLK DLPSELSPGL VLAGFSKRAP PFDAVVSTAG YVLETLPRGA
LVGTSSVRRA EFVKAIRPDV RVEPLRGNVD TRINKILQGK YDAAIMAVAG IYRLYGASPP
IKLAVLRPEV LPPPPGQGIV AAVVREADSW LIDLLKKASD PKASLEAIAE REFLKAVGAG
CHVAIGGVAF ARNDTVEFIA GYASGGRKYI VRVVGDDPVE VGRRAAEEIR KFKDGDV