Gene Pars_2012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPars_2012 
Symbol 
ID5056002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum arsenaticum DSM 13514 
KingdomArchaea 
Replicon accessionNC_009376 
Strand
Start bp1800886 
End bp1801983 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content59% 
IMG OID640469561 
ProductFAD dependent oxidoreductase 
Protein accessionYP_001154211 
Protein GI145592209 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTTG TGATAGTTGG CGGGGGGATT GTTGGCCTCT TTACTGCTTT TTACCTACAA 
AACGAGGGGG CGGACGTCGT AGTAGTGGAA CAGGGAGAGG TGGGGGGCTG GTCCCGGGCG
GCGGCTGGGA TACTGGAATT CACCCGGTTC GTAATAAACC GAATAAACGT CAAGTCGTAC
CCCTGGAGGT ATTTCAAGAT GATGATACGC GGCGACGCCC GGGTAAAGAC CTGGGACTGG
GGGTGGATTA GGGCCTACCT GGGGGTCTGG GGCAGGGAAC CACCTCAAGA GATGTGGGAG
GCCATAAGGA CGCTGGGGGA CTTCTCGTGG CGGCAGTACA GGGCTCTGGC AGAGGCGAAA
AACGACTTCG ACTACGCGGA GGAGCCGCTC TACGAGGTGG GCGTCGACGT AGGCAAAGCC
CTAGAAGAAG CGAAGAAAGA CCCGCTGGCG CCGAGGGTGG AGGCGGGGAA GTGTTGCGGA
ATGGAGGCGC TGGCCTACCT AGACGCCGCC AAGCTGTCCA CCGACGCCTT CGTTGAGCGT
ATGCTCAGAG AGCTACGGGG CGTGCAATTT GTAAAAGGAA AAGCCCAGGA GGTGGCCGGC
AAAGAGGTCT GGCTAGAGGG CGGCAACGTC TTACAGGCAG ACGCCGTGGT GGTGGCCGCC
GGCTACTGGG CGAGGAAATT CGGAGTCCCC GTGGCGCCTT TCAAAGGCTA CGGCTTTCTC
ACAAATGCCA AGGCAGATAA AATGTTTATA GACATGGTTA GAGGCATCGC CGTTGTCCCC
CTGTCGAAGT ATACGAAAGT TACTGGAAGA TTTGACCTAG ACGGCACAGA TAACCACTCG
CCTTCTAAAA AGGTATTACA GAGGGCCCGT GAAATTCTTG GCAACTTCGA CGTGGCGGCC
AGCGCGGTGG GCTACAGGCC GTGCACCCCA GACGGCTTCC CCGTCGTGGA CAGAATAGGC
TCCGTAGTGA TAGTGACGGG GGCCTGCCGC CTCGGCTGGA CCTACGGCCC CGCCCTGGGT
AAACTAGCCG CGGACCTCGC CCTAGGGAGG CGCAGGGTGG AGGCCCTCTC CGCGGCGAGA
TTTATCAGGA GCAGGTGA
 
Protein sequence
MKVVIVGGGI VGLFTAFYLQ NEGADVVVVE QGEVGGWSRA AAGILEFTRF VINRINVKSY 
PWRYFKMMIR GDARVKTWDW GWIRAYLGVW GREPPQEMWE AIRTLGDFSW RQYRALAEAK
NDFDYAEEPL YEVGVDVGKA LEEAKKDPLA PRVEAGKCCG MEALAYLDAA KLSTDAFVER
MLRELRGVQF VKGKAQEVAG KEVWLEGGNV LQADAVVVAA GYWARKFGVP VAPFKGYGFL
TNAKADKMFI DMVRGIAVVP LSKYTKVTGR FDLDGTDNHS PSKKVLQRAR EILGNFDVAA
SAVGYRPCTP DGFPVVDRIG SVVIVTGACR LGWTYGPALG KLAADLALGR RRVEALSAAR
FIRSR