Gene Pars_1714 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPars_1714 
Symbol 
ID5054585 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum arsenaticum DSM 13514 
KingdomArchaea 
Replicon accessionNC_009376 
Strand
Start bp1546711 
End bp1547712 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content54% 
IMG OID640469257 
ProducteRF1 domain-containing 1 protein 
Protein accessionYP_001153917 
Protein GI145591915 
COG category[R] General function prediction only 
COG ID[COG1537] Predicted RNA-binding proteins 
TIGRFAM ID[TIGR00111] probable translation factor pelota 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.839139 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0545178 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGATACG AGGTTGACAA GAGGCGGCGT ATTGTAAGAG TCACGCCTGA GAGGGACGAG 
GACCTCTATT TTCTCTACCT CCTAATAGAT GTCGGTGACG TGGTGAGAGG GTGGACTGTG
AGGGAGTACA AACCGGACGG CACGAAGGAG GGAGAGCGGG TTAAAATGTT TCTTGGCATT
AAGGTCGAGG CGTTGGAGTA CCACAAGTTC CGCGGTAGCT TGAGAGTGAG GGGGCCTGTG
GTGGAGGTCG AGGAGGGCAT AGAGGGCGTC AAGGGGAGGA GGCACACCTT TGACATAGTG
GCTGGGAGAG AGGTCGAGAT CGAAAAGGGA GACGAGGAGG CTCTAGAGGC GGCCGAAGGC
GTGTTGGAGA TGGCCAAGGG CATACTGCCG AGGATTCTCC TGGTGTCTGT AGACGACGAG
GAGGCGGCCT TTGCCTACGT GACGGCGTTG GGAGTAGAGG TATTGTATTT TCTACGCAAC
GACGCCAGGA GAGGTGGTGA GGAGGGGAGC CTATTAGACG AATTTCTAGC CGCGGTGGGA
AAGGCAACGG AGAACCTAAG GCGTCGCTAC AACCCAGACA AGGTCGTGCT CGCAGGCCCC
CACATTATCT TGGAACATGT TGCGAGATAC GTACACGGAG ACCGCATCCC GCAGAGCTCT
GGCGGCCTAG CCGGAGTGTA CGAATTCGTG AGAAGAGGGC TCTACGACGC GTTTAAGGCC
GAGATAGGCT TCTCAGCGTA TGAAAAACTT CTGCAACTAT TAGCTACGAA CAGCGAGAGG
GTGGCGACGG GACCTAAAGA TGTTGAGGAG GCAGCCTCTG CTGGGCGCAT TGACGCGTTG
CTGGTGCTGG ATTCTTTCAT AAAAGAAAAC CCGAGAGAGG TCTGGGCTAT TATATCCCGC
GCGTATAAAA GCCGTAGCAA GATCTTCATA ATTCGAGAAG ATACAGAAAT AGGCGTTGGG
CTTAGAGCAA TGGGAGGAGT TGCAGCTATA TTGAGATGGT AA
 
Protein sequence
MRYEVDKRRR IVRVTPERDE DLYFLYLLID VGDVVRGWTV REYKPDGTKE GERVKMFLGI 
KVEALEYHKF RGSLRVRGPV VEVEEGIEGV KGRRHTFDIV AGREVEIEKG DEEALEAAEG
VLEMAKGILP RILLVSVDDE EAAFAYVTAL GVEVLYFLRN DARRGGEEGS LLDEFLAAVG
KATENLRRRY NPDKVVLAGP HIILEHVARY VHGDRIPQSS GGLAGVYEFV RRGLYDAFKA
EIGFSAYEKL LQLLATNSER VATGPKDVEE AASAGRIDAL LVLDSFIKEN PREVWAIISR
AYKSRSKIFI IREDTEIGVG LRAMGGVAAI LRW