| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_1684 |
|---|
| Symbol | |
|---|
| ID | 5054260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum arsenaticum DSM 13514 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009376 |
|---|
| Strand | - |
|---|
| Start bp | 1519476 |
|---|
| End bp | 1520717 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640469225 |
|---|
| Product | pseudouridylate synthase |
|---|
| Protein accession | YP_001153887 |
|---|
| Protein GI | 145591885 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0585] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.667214 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGGGAGG CTCCGCCGTT CGACAAGGCG CTTGGCATGT ACTACTATGT GACTGACACG
TGCCCCTCGG GGGGCGTGAT TAAGAAGAGC CCAGAGGACT TCGTCGTGGA GGAGGTGCTG
GCGGATGGGA CGGTGGTGGC CGTCGGCGGC GTGGAGCTGA GGCCGAGGGT CGGGGGCTGG
ACGTGGATCC ACGTGGTGAA GCGCAATGTC GACACGATTA GGCTGATGAT ACGCCTCGCC
AAGGCCCTCG GCGTAAGTCC CAGGGAAGTG TCTGTGGGAG GTATCAAGGA TACCCGGGCT
GTGGCCTCCC ACATAATCTC GGTTAGGGGG GCCGTGAAAG GTTTGCCGGA GATCCCCGGC
GTCAAGTTCC TCGGCATGTG GTCAATGGAT AGGCCTATGT CGCCGTCTGA GATATACGGC
AACCGCTTCA CCATTGTGTT ACGCGACGTG GAGAGGGTGG ACTGCGCCGT GGAGGCTCTG
GAGGCCTTGA AGAGCGCGGC GGTGCCCAAC TACTACGGCT ACCAGCGCTT CGGCACTATT
AGGCCTGTGT CGCACCTCTT GGGCAGGGCG CTTTTGCGGA AAAGCCCCGA GGAGTTTTTC
GACGCGATGT TCTGCAAGAT CTTCGAACAC GAATCGGCCG CCGCGAAGAA GGCCAGGGAG
CTGGCGTGTA GGGGGGAGTA CCAGAAGGCC CTAGAGACCT TCCCCAGGCG ATTTGTCGAG
GAGAGGGCCT TCCTCCGCAG GCTGGCTCAG GGCTATGACA TGTGGAACGC CATTATGGGG
ATACCCCTCC AGATCTTGCG GATATACGTC GAGGCGGCCC AGTCCTACCT CTTCAACAGA
TTCTTATCCG CCCGGCTGGA GCTAGGCCCC CTGGACAAGC CTCTAGAAGG CGACCTCGTG
GAGGTGGGTG GGCAGGTGGC ATATTACGCC GAGGGCCTCG GGGGGGATGT TGTGTTGCCG
GTGGCCGGCG CGGGGGTCAG GATGCCGCGG GGCAAGGTGG GGGAGGCGTT GCTGAAGGTG
ATGAAGGAGG AGGGGGTTGA CCCCGCGGCT TTTTTGAAAA TGCCCAGAGG CCTAAAGGCC
TACGGCTCGT ACCGCCGCGC CAGGCTGGAG GTGGGTGACT TCTCCTACGC TGTTCGGGGC
AGAGACGTGG AGCTCCGGTT TGTCTTGCCC AGGGGGAGTT ACGCCACGGT GCTTCTGAGA
GAGGCGGTGA AGCCGGCGGA GCCGTACAGA CATGGGTTTT AG
|
|---|
| Protein sequence | MREAPPFDKA LGMYYYVTDT CPSGGVIKKS PEDFVVEEVL ADGTVVAVGG VELRPRVGGW
TWIHVVKRNV DTIRLMIRLA KALGVSPREV SVGGIKDTRA VASHIISVRG AVKGLPEIPG
VKFLGMWSMD RPMSPSEIYG NRFTIVLRDV ERVDCAVEAL EALKSAAVPN YYGYQRFGTI
RPVSHLLGRA LLRKSPEEFF DAMFCKIFEH ESAAAKKARE LACRGEYQKA LETFPRRFVE
ERAFLRRLAQ GYDMWNAIMG IPLQILRIYV EAAQSYLFNR FLSARLELGP LDKPLEGDLV
EVGGQVAYYA EGLGGDVVLP VAGAGVRMPR GKVGEALLKV MKEEGVDPAA FLKMPRGLKA
YGSYRRARLE VGDFSYAVRG RDVELRFVLP RGSYATVLLR EAVKPAEPYR HGF
|
|---|
| |