| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_1576 |
|---|
| Symbol | rpl6p |
|---|
| ID | 5054194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum arsenaticum DSM 13514 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009376 |
|---|
| Strand | - |
|---|
| Start bp | 1426209 |
|---|
| End bp | 1426799 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640469117 |
|---|
| Product | 50S ribosomal protein L6P |
|---|
| Protein accession | YP_001153782 |
|---|
| Protein GI | 145591780 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0097] Ribosomal protein L6P/L9E |
|---|
| TIGRFAM ID | [TIGR03653] archaeal ribosomal protein L6P |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000000756586 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTTG TCTACAGCGT TGAGGAGGTG GAAATTCCTA AGGGCGTGAA TGTGTCGATT
GAGAAGACTG GGCCATTCGA CTACGTTGTG AAAGTAAAAG GTCCACTTGG TGAGTTGGTA
AAAGAGTTTA GGAACACCCC TGTTGTCATG AACGTCCAAG ATGGCAAGAT ACTGCTAGAG
GTCTTCAATG TGAGAAAAAA GGAATATGCG ATACTGGGGA CTTACAAGGG CATTTTGAAG
AACATGTTCC TAGGTGTGAC CAAGGGCTGG AGATACAAGC TGAAGATAAT CTACACGCAC
TTCCCGGTCC TCGCCAAGGT GCAGGGAAGC CAGCTAGTTA TCGAGAATTT CTTAGGCCGT
AAGTCTAAAA TTACGCTGGA TATACCAAAA GGCGTTAAGG TTGAGGTAAA GGGTAAGGAG
GACATAGTGG TGGAGGGCAT AGACAGAGAG CTGGTGGGCA CATTCGCCTC CTCAATACAA
GCCGCCACTG AGCTACATGG AGATGAGAGA CCGTCGCCGC ACGGCCGCGA GGGGACGCTG
GGCGTTGTGG ATGGGATCTA CGTCGTGGGG GTTGAGCACA TCAAAGCCTA A
|
|---|
| Protein sequence | MRVVYSVEEV EIPKGVNVSI EKTGPFDYVV KVKGPLGELV KEFRNTPVVM NVQDGKILLE
VFNVRKKEYA ILGTYKGILK NMFLGVTKGW RYKLKIIYTH FPVLAKVQGS QLVIENFLGR
KSKITLDIPK GVKVEVKGKE DIVVEGIDRE LVGTFASSIQ AATELHGDER PSPHGREGTL
GVVDGIYVVG VEHIKA
|
|---|
| |