| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_1161 |
|---|
| Symbol | |
|---|
| ID | 5055660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum arsenaticum DSM 13514 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009376 |
|---|
| Strand | - |
|---|
| Start bp | 1048009 |
|---|
| End bp | 1048521 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640468711 |
|---|
| Product | CRISPR-associated RAMP Cmr6 family protein |
|---|
| Protein accession | YP_001153384 |
|---|
| Protein GI | 145591382 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1604] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
|---|
| TIGRFAM ID | [TIGR01898] CRISPR-associated RAMP protein, Cmr6 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.95233 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00879473 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGGCGTAG ACGCTGAGGT GGAGACGAGG CTTGCCATAC ACACCAAGAG CCCATACGCC
CATCTCGTGA TAGGCATCTC TTGGCACCCA GTCATCAACC TCCCCTACAT CCCAGCCACC
TCGCTGAAAG GCGCCGCCAG GGCGTATGCG GAGGTAAACA ACTTCGTGCC GTGCGGCAAG
GCGCCGGAGG AGCTCTTCGG TAAGGCGGGC GGGGCAGGCC TTGTCGAGCT CACAGACGCG
TACCCGGTCA GGTGTGGGGA CAAGCTCATC GAGCTCGACA TAGTAAACCC CCACTACAGA
GAGACCGAGA GGGCGATAGG GGAGACCGAC GCCAGCCCAA CCCCACTGCT CTTCCCCGCC
GTTGCTAGGG GCGTCGTGTT CCGCTTCTTC ATAGCGCCGA GGGCGGAGGC CGACGGAAAA
TGCCTAACCG ACGTACTCGA CGTAATCCGC GGCGCCCTTG CAGAAGGCAT TGGCGCAAAG
ACCCGCCTCG GATACGGCGT GTTGAAGCCA TAG
|
|---|
| Protein sequence | MGVDAEVETR LAIHTKSPYA HLVIGISWHP VINLPYIPAT SLKGAARAYA EVNNFVPCGK
APEELFGKAG GAGLVELTDA YPVRCGDKLI ELDIVNPHYR ETERAIGETD ASPTPLLFPA
VARGVVFRFF IAPRAEADGK CLTDVLDVIR GALAEGIGAK TRLGYGVLKP
|
|---|
| |