| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_0538 |
|---|
| Symbol | |
|---|
| ID | 5055512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum arsenaticum DSM 13514 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009376 |
|---|
| Strand | - |
|---|
| Start bp | 483307 |
|---|
| End bp | 483894 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640468100 |
|---|
| Product | protocatechuate 4,5-dioxygenase |
|---|
| Protein accession | YP_001152785 |
|---|
| Protein GI | 145590783 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.597142 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.30708 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAA TAGTCTTAGG GCTAGCAGCT ACCCACGCCC CCGGGATAAC CGCCAGGGCT
GAGGAGGAGC CGCCGCATGT GAGAGAGCGG GTCTACGGAA ATTACGAAAA GCTCAGAGGA
GTGCTGGAGG AGGCGAAGCC AGACGTCTTG TTGGTAGTTG CCAATGACCA CGTGACGTAT
ATGTTTGAAA TTATCCCCCA GTTTTTAATA GTCGTGGCGG ATGAATACGA GGGTCCTCCG
GATTATGAAT GGCTTAGAAT TCCGAAGTAC AAGGTGAGGT TTAAAAGAGA TCTGGCCGAG
CACATACTAA ACGGCTTAGT GGAAAGGGGT TTTGACATCG CCTTTTCGGC GAACCCCATC
CTCGACCACG CCACCATGAA CCCCCTCCAC TTCTTGGCGA GCGACCGTGA AGGGGGCGTC
ATAAAGTACC CCATCGTGTC GCTTTTGACA AACGCCTTCG TGAAGCCTCT GCCCCCCCTG
AGGAGGGGGT ACCAGCTCGG GCTCGCCCTA CGGGAGCTCG TTGAGCAGTT CCCCGAGGAC
CTCCGCGTGG CGGCTCTTGC CACGACGTGG AGTCCGCGCT TAAGCTGA
|
|---|
| Protein sequence | MAKIVLGLAA THAPGITARA EEEPPHVRER VYGNYEKLRG VLEEAKPDVL LVVANDHVTY
MFEIIPQFLI VVADEYEGPP DYEWLRIPKY KVRFKRDLAE HILNGLVERG FDIAFSANPI
LDHATMNPLH FLASDREGGV IKYPIVSLLT NAFVKPLPPL RRGYQLGLAL RELVEQFPED
LRVAALATTW SPRLS
|
|---|
| |