| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OSTLU_29301 |
|---|
| Symbol | |
|---|
| ID | 5006690 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ostreococcus lucimarinus CCE9901 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009374 |
|---|
| Strand | + |
|---|
| Start bp | 19272 |
|---|
| End bp | 20919 |
|---|
| Gene Length | 1648 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | |
|---|
| GC content | 59% |
|---|
| IMG OID | 640422111 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001422452 |
|---|
| Protein GI | 145356470 |
|---|
| COG category | [A] RNA processing and modification |
|---|
| COG ID | [COG5183] Protein involved in mRNA turnover and stability |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.106062 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACGC GCCGACGCGC GCGCGCCTCG CCGACGCGCG AGAAAACGAC GACCGAGGAA
GATGCCGACG CGTGTCGGTT TTGTTTCGAA AGCGCGCGGG AAGACGACCC GTTGATCGCG
CCGTGCGCGT GCAGAGGAGG ACAAGAGTAC ATACACGCGA AGTGCTTGCT TCGATGGCAG
CGCATGGTGG TGGTGCAAGC GCCGACGCAT CCGGCGTTTT GGAACGAGGA CACGCGGAGC
AACGTGTGCA ACGTGTGCAA GGAGGCGTTT ACGACGCCGC CGCCGACGCG AATGACGCTG
ATGAGCTCGT TCACGGGAGC GGAGATCGCG GCGATGTGCG CCGTCGGGCA CTTGTTGGTG
TCGCACGCCG CGTTTAGCGC CAAACTTCGA GAGAAATTGC AAGACATGAA CCCGGCGATG
CGGCGGATTT GCTCGTACGA GTACTGGATC GAAGGGACGT ACTTGATCAC GGAGACGCGC
GCGTCGTCGG ACGAAGCGGG GGAGTCGAGC GAAGGAGACG TAGGCGATGA CACAATCGTG
GCGGTGAACT TGAACGGGCG ATGCGACGTG AGTGAGTTCA TCCAGGGCGA AAGTCAGTTG
TTTGAGATTG TCGGCGCCGG CGGACAATCT CGCGTGCGCT TGCGCCAAGA ATTTGAAGAA
GGAAACGATG ACGATGACGA CAATGATGAC GACAATGATG GCGATAATGA TGACGACAAT
GATGACGATA ATGATGACGA CGAACGAAAT ACGGCAGACG TGGATGACGC AGACGTGACG
AACGAGGACG CCGACGAGGA CGATTTGCCC CGAGACGAAA TCGCCGACGA CGCAGAGCAA
ACACCGGAAC TTGTCATCGA AGTTCCCGAA GACGTTGCTG ACGATCGAGA GGCGTTTATC
GAGCACCTAC AACAGCTATT ATCACCGTCC ATTTTTGAGG TGTATCAGCG ATTTCGCAGG
CGGCGAGTCA TCGAGGACGC CTACGACGAA GTCGCCAGGG AATGGCGAGT CACGCGCCAG
GACGTCGAGA ACGCGGTTGA GATAGAGCCG TTCGATGGTG GACCGTGCGA TCACGACGAA
GTCGCGTTGT GCATTGTCGT CGGTACGGAC ACGTCGTGCG GCTACACGAA AGTCGAGGGA
AGTTTGGCGG GCGCCATCAG CGTAGCGTTT AGAAATTCTC GCGCGTACGC CGACTCGACC
GACGGTTTGC GAGCGGGTGC CGTCGTGACA TGCGCCGCAA CCGCCGACGT GCGCGAGGCC
GTTGGCGTTC TGTGCGGGTT TTCGGAAGAA TCGAACACGT GGAACGTCGC TTCGCCTTTC
GGCGTGCTGA AACGAACTCG AGAGGAGTTC GAGGTTCTTC GAAGCCCGAC GCGCGCCAAA
GTGCTCTGCT TCTTCGGCAC CGCGCAATGG AACCGATCGC AACTTTTGGG TGAAATCGCG
AGAGGACACT GGGGGTTGAC GAAATCAGAG CCCGTCGACG TGGCGCGCGC AGAAACTGCG
TATCGCCGCG CGATGGATTC TGGATCGCTC GTGTTTGCGC CGTTGACTGA AATGACGGAG
GAGTTTATGC GCGACGAACT CGCAGAGATG TCGCGCATTC GATCGAGCGG TCAGCTCGAC
CGCGCGGGGT CATCCGCGTC CCACTGAT
|
|---|
| Protein sequence | MSTRRRARAS PTREKTTTEE DADACRFCFE SAREDDPLIA PCACRGGQEY IHAKCLLRWQ
RMVVVQAPTH PAFWNEDTRS NVCNVCKEAF TTPPPTRMTL MSSFTGAEIA AMCAVGHLLV
SHAAFSAKLR EKLQDMNPAM RRICSYEYWI EGTYLITETR ASSDEAGESS EGDVGDDTIV
AVNLNGRCDV SEFIQGESQL FEIVGAGGQS RVRLRQEFEE GNDDDDDNDD DNDGDNDDDN
DDDNDDDERN TADVDDADVT NEDADEDDLP RDEIADDAEQ TPELVIEVPE DVADDREAFI
EHLQQLLSPS IFEVYQRFRR RRVIEDAYDE VAREWRVTRQ DVENAVEIEP FDGGPCDHDE
VALCIVVGTD TSCGYTKVEG SLAGAISVAF RNSRAYADST DGLRAGAVVT CAATADVREA
VGVLCGFSEE SNTWNVASPF GVLKRTREEF EVLRSPTRAK VLCFFGTAQW NRSQLLGEIA
RGHWGLTKSE PVDVARAETA YRRAMDSGSL VFAPLTEMTE EFMRDELAEM SRIRSSGQLD
RAGSSASH
|
|---|
| |